Genomic Location: not available for this species
NR annotation: CAB4041129.1, urocanate hydratase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4041129.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q96N76 | Urocanate hydratase OS=Homo sapiens OX=9606 GN=UROC1 PE=1 SV=1 |
| Q8VC12 | Urocanate hydratase OS=Mus musculus OX=10090 GN=Uroc1 PE=1 SV=2 |
| Q9NAE2 | Probable urocanate hydratase OS=Caenorhabditis elegans OX=6239 GN=Y51H4A.7 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003393 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01175 all species → | Urocanase | Urocanase Rossmann-like domain | Domain | Interproscan |
| PF17391 all species → | Urocanase_N | Urocanase N-terminal domain | Domain | Interproscan |
| PF17392 all species → | Urocanase_C | Urocanase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023636 all species → | Conserved_site | Urocanase conserved site | Interproscan |
| IPR036190 all species → | Homologous_superfamily | Urocanase superfamily | Interproscan |
| IPR035085 all species → | Domain | Urocanase, Rossmann-like domain | Interproscan |
| IPR035400 all species → | Domain | Urocanase, N-terminal domain | Interproscan |
| IPR023637 all species → | Family | Urocanase | Interproscan |
| IPR038364 all species → | Homologous_superfamily | Urocanase, central domain superfamily | Interproscan |
| IPR035401 all species → | Domain | Urocanase, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12216 all species → | UROCANATE HYDRATASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016153 all species → | Molecular Function | urocanate hydratase activity | Interproscan |
| GO:0006548 all species → | Biological Process | L-histidine catabolic process | Interproscan |
CAB4041129.1.Transcript abundance of CAB4041129.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
