Genomic Location: not available for this species
NR annotation: CAB4041274.1, msx2-interacting -like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4041275.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8SX83 | Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2 |
| Q62504 | Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2 |
| Q96T58 | Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002806 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07744 all species → | SPOC | SPOC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016194 all species → | Homologous_superfamily | SPOC-like, C-terminal domain superfamily | Interproscan |
| IPR010912 all species → | Domain | Spen paralogue/orthologue C-terminal, metazoa | Interproscan |
| IPR012921 all species → | Domain | Spen paralogue and orthologue SPOC, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23189 all species → | RNA RECOGNITION MOTIF-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
CAB4041275.1.Transcript abundance of CAB4041275.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
