Gene detail

Detailed information of CAB4042497.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4042497.1, syntaxin-1A isoform X4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4042497.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16932	Syntaxin OS=Aplysia californica OX=6500 PE=2 SV=1
Q5TX47	Syntaxin-1A OS=Anopheles gambiae OX=7165 GN=Syx1A PE=1 SV=2
O16000	Syntaxin-1A homolog OS=Caenorhabditis elegans OX=6239 GN=unc-64 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003048 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00804 all species →	Syntaxin	Syntaxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010989 all species →	Homologous_superfamily	SNARE	Interproscan
IPR006011 all species →	Domain	Syntaxin, N-terminal domain	Interproscan
IPR045242 all species →	Family	Syntaxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19957 all species →	SYNTAXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0048278 all species →	Biological Process	vesicle docking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4042497.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.