Genomic Location: not available for this species
NR annotation: CAB4042800.1, cytoplasmic aconitate hydratase-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4042800.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P21399 | Cytoplasmic aconitate hydratase OS=Homo sapiens OX=9606 GN=ACO1 PE=1 SV=3 |
| P28271 | Cytoplasmic aconitate hydratase OS=Mus musculus OX=10090 GN=Aco1 PE=1 SV=3 |
| Q0VCU1 | Cytoplasmic aconitate hydratase OS=Bos taurus OX=9913 GN=ACO1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002405 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00330 all species → | Aconitase | Aconitase family (aconitate hydratase) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018136 all species → | Binding_site | Aconitase family, 4Fe-4S cluster binding site | Interproscan |
| IPR006249 all species → | Family | Aconitase/Iron-responsive element-binding protein 2 | Interproscan |
| IPR001030 all species → | Domain | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain | Interproscan |
| IPR015931 all species → | Homologous_superfamily | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 | Interproscan |
| IPR036008 all species → | Homologous_superfamily | Aconitase, iron-sulfur domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11670 all species → | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003994 all species → | Molecular Function | aconitate hydratase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0006101 all species → | Biological Process | citrate metabolic process | Interproscan |
| GO:0030350 all species → | Molecular Function | iron-responsive element binding | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00605 | gcvT, AMT; glycine cleavage system T protein (aminomethyltransferase) | EC:2.1.2.10 | One carbon pool by folate | ko00670 | deepkoala |
Transcript abundance of CAB4042800.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 3.49 | 7.88 | |
| apical branchlet · Temperature treatment at T0 | 6 | 2 | 1.44 | 5.69 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.76 | 8.81 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.78 | 7.11 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
