Detailed information of CAB4044215.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4044215.1, zinc finger BED domain-containing 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4044215.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003206 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for CAB4044215.1 in Paramuricea clavata.
 InterPro
InterPro termTypeDescriptionSource
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47501
all species →		TRANSPOSASE-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for CAB4044215.1 in Paramuricea clavata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4044215.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4044215.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
2TPM > 0
4Conditions
0.7Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 0 0.00 0.00
apical branchlet · Temperature treatment at T0 6 1 0.05 0.28
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 1 0.17 0.68

Per sample · hover a bar for the full sample record

Show the sample table (21 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR19977433 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977439 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977440 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977441 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977444 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977455 apical branchlet · Control at T25 apical branchlet not recorded Control at T25 SRP384900 0.00
SRR19977438 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.28
SRR19977426 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.00
SRR19977427 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.00
SRR19977428 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.00
SRR19977436 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.00
SRR19977437 apical branchlet · Temperature treatment at T0 apical branchlet not recorded Temperature treatment at T0 SRP384900 0.00
SRR19977425 apical branchlet · Temperature treatment at T25 apical branchlet not recorded Temperature treatment at T25 SRP384900 0.00
SRR19977432 apical branchlet · Temperature treatment at T25 apical branchlet not recorded Temperature treatment at T25 SRP384900 0.00
SRR19977434 apical branchlet · Temperature treatment at T25 apical branchlet not recorded Temperature treatment at T25 SRP384900 0.00
SRR19977435 apical branchlet · Temperature treatment at T25 apical branchlet not recorded Temperature treatment at T25 SRP384900 0.00
SRR19977463 apical branchlet · Temperature treatment at T25 apical branchlet not recorded Temperature treatment at T25 SRP384900 0.00
SRR19977443 apical branchlet · Control at T0 apical branchlet not recorded Control at T0 SRP384900 0.68
SRR19977442 apical branchlet · Control at T0 apical branchlet not recorded Control at T0 SRP384900 0.00
SRR19977445 apical branchlet · Control at T0 apical branchlet not recorded Control at T0 SRP384900 0.00
SRR19977446 apical branchlet · Control at T0 apical branchlet not recorded Control at T0 SRP384900 0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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