Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites evermanni · all data for this species · gene families
CAH3026886.1 in PEVER (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003315 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14639 all species → | YqgF | Holliday-junction resolvase-like of SPT6 | Domain | Interproscan |
| PF17674 all species → | HHH_9 | HHH domain | Domain | Interproscan |
| PF14635 all species → | HHH_7 | Helix-hairpin-helix motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037027 all species → | Homologous_superfamily | YqgF/RNase H-like domain superfamily | Interproscan |
| IPR028231 all species → | Domain | Transcription elongation factor Spt6, YqgF domain | Interproscan |
| IPR017072 all species → | Family | Transcription elongation factor Spt6 | Interproscan |
| IPR042066 all species → | Homologous_superfamily | Spt6, Death-like domain | Interproscan |
| IPR041692 all species → | Domain | HHH domain 9 | Interproscan |
| IPR023323 all species → | Homologous_superfamily | Tex-like domain superfamily | Interproscan |
| IPR032706 all species → | Domain | Transcription elongation factor Spt6, helix-hairpin-helix motif | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10145 all species → | TRANSCRIPTION ELONGATION FACTOR SPT6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006139 all species → | Biological Process | nucleobase-containing compound metabolic process | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0008023 all species → | Cellular Component | transcription elongation factor complex | Interproscan |
| GO:0031491 all species → | Molecular Function | nucleosome binding | Interproscan |
| GO:0034728 all species → | Biological Process | nucleosome organization | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:0140673 all species → | Biological Process | transcription elongation-coupled chromatin remodeling | Interproscan |
CAH3026886.1.Genes whose expression across the transcriptome samples of Porites evermanni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites evermanni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
