Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites evermanni · all data for this species · gene families
CAH3174219.1 in PEVER (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003967 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03446 all species → | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | Domain | Interproscan |
| PF14833 all species → | NAD_binding_11 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013328 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase, domain 2 | Interproscan |
| IPR011548 all species → | Family | 3-hydroxyisobutyrate dehydrogenase | Interproscan |
| IPR002204 all species → | Conserved_site | 3-hydroxyisobutyrate dehydrogenase-related, conserved site | Interproscan |
| IPR006115 all species → | Domain | 6-phosphogluconate dehydrogenase, NADP-binding | Interproscan |
| IPR015815 all species → | Family | 3-hydroxyisobutyrate dehydrogenase-related | Interproscan |
| IPR029154 all species → | Domain | 3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22981 all species → | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006574 all species → | Biological Process | valine catabolic process | Interproscan |
| GO:0008442 all species → | Molecular Function | 3-hydroxyisobutyrate dehydrogenase activity | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050661 all species → | Molecular Function | NADP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00020 | HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase | EC:1.1.1.31 | Valine, leucine and isoleucine degradation | ko00280 | deepkoala |
Genes whose expression across the transcriptome samples of Porites evermanni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites evermanni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
