Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites evermanni · all data for this species · gene families
CAH3183623.1 in PEVER (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009763 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00547 all species → | Urease_gamma | Urease, gamma subunit | Domain | Interproscan |
| PF00699 all species → | Urease_beta | Urease beta subunit | Domain | Interproscan |
| PF01979 all species → | Amidohydro_1 | Amidohydrolase family | Domain | Interproscan |
| PF00449 all species → | Urease_alpha | Urease alpha-subunit, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005848 all species → | Family | Urease, alpha subunit | Interproscan |
| IPR032466 all species → | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| IPR036463 all species → | Homologous_superfamily | Urease, gamma subunit superfamily | Interproscan |
| IPR036461 all species → | Homologous_superfamily | Urease, beta subunit superfamily | Interproscan |
| IPR002026 all species → | Family | Urease, gamma/gamma-beta subunit | Interproscan |
| IPR017950 all species → | Active_site | Urease active site | Interproscan |
| IPR011059 all species → | Homologous_superfamily | Metal-dependent hydrolase, composite domain superfamily | Interproscan |
| IPR050112 all species → | Family | Urease Alpha Subunit | Interproscan |
| IPR002019 all species → | Family | Urease, beta subunit-like | Interproscan |
| IPR029754 all species → | Binding_site | Urease nickel binding site | Interproscan |
| IPR006680 all species → | Domain | Amidohydrolase-related | Interproscan |
| IPR008221 all species → | Family | Urease | Interproscan |
| IPR017951 all species → | Domain | Urease alpha subunit, C-terminal | Interproscan |
| IPR011612 all species → | Domain | Urease alpha-subunit, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43440 all species → | UREASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006807 all species → | Biological Process | obsolete nitrogen compound metabolic process | Interproscan |
| GO:0009039 all species → | Molecular Function | urease activity | Interproscan |
| GO:0016151 all species → | Molecular Function | nickel cation binding | Interproscan |
| GO:0043419 all species → | Biological Process | urea catabolic process | Interproscan |
| GO:0016810 all species → | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Interproscan |
| GO:0035550 all species → | Cellular Component | urease complex | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01427 | URE; urease | EC:3.5.1.5 | Atrazine degradation | ko00791 | deepkoala |
Genes whose expression across the transcriptome samples of Porites evermanni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites evermanni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
