Gene detail

Detailed information of Csp0G000390 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00005:535715...539762
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08797 all species →	HIRAN	HIRAN domain	Domain	Interproscan
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR014905 all species →	Domain	HIRAN domain	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR019974 all species →	Conserved_site	XPG conserved site	Interproscan
IPR044752 all species →	Domain	Exonuclease 1-like, PIN-like domain	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000729 all species →	Biological Process	DNA double-strand break processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G000390.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.