Gene detail

Detailed information of Csp0G003370 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00010:3473886...3528853
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G003370

ATGTTATGCTGGAACATTGCTTCATCCAAATTTCTCCAAGAAAAACAAAGTGATTATGAAAAATTAGGAGAAGAAGATCTGGATAATGAGATGGACGGTAAAACAAAAGCTAAGCAAGGTGAGCAAGAGGAATCTGATGATGGAATTGGAGCCAGAATAACCATAATTATTCAAAATGTTGCGAATTTTGCTTCAAGCATGCTTGTCAGTTTTATTCAAAATTGGCAACTAACCTTGATGATGCTTGTGGCTGCACCAATTATGGCTTCAGTTATGTTTTATATGAATAAGCTGAAATCGTTTGCTATGGATAAAGTTAAATTTCTTTTACAAAAAGCAAAAGGCGTGGCAAAAGGAGCATTTTCTCAAGTACAAACTGTAGCAGCATTTGGAGGACAAGATTTTGAAAAAAACAAATTTTCTAGTAAATTGCTCGCAGCTGATAAAGCTGCTAAAATTCGTAGCATCGTAGACGCAGTTCGCGCAGGAATGATGATTGTCATTGCATTTAGTTTTCTTGGAATTGGCTTTTGGTTTAGTGCAGGGTTGATTCTAGATGGAACATTGACTCCTGGAGCTTTTATTTCGATATTTATGGCGATAATATCATCAGTTCTTAAGCTTGTCAACGTTGGTGGTGCAGTTCAAGTTGATAATGGAAAAGACGACGAAAAGGATGAAAAATCCAATTCATATGAGGAAAATCCACCCACAGATATTATTGGAAGAATTCTCGAACATTTATCGAACCCAGAAGATGTTTTTAAATATTATCCAAATCGACCAGAATCGAAAGATATTTTCCAATCGCTGAGTCACAACAGTGACTATTGGCTCGCTTCGACATTGCTGTTTTGGCTGCTGACGAGTGGAAATAGATTTATTTCGAATGACAGAAGACACAACCTCTGCGGAGGAGAGAGGAGCAAGGAGCGTCTCACTAAATGTTTTGAAAATGCTAAATCATGGGTTGATGCAAAGGTTATTGGCCAGATCAAAAAACGAGGAATATCCATGGAAGTAATCAAATTACAAATTAAACAACTTCCTTTAATCATGATGAGTCTTATGGGTGCTGTGATGACAGGATTGATTGCACCAGGATTTTCACTTTTACTTAGTGAAATTTTAATAGTAACTGCTGATCCAAAGCGTCTAGAGGCAGAGCGTTATAAATGGGCTTTTAAATTTGTTGATCTTGGAGTATTTATAGCCATTGGTTCAACCATTCAGAAATTTGCAACATCTTTAAGTGAAAGTAGACTAGAGATGGGAATGAAGGAAAATTCTTTTAATTCTACAATGAACGAGAGCGAGATACCGAAGACAACAACCTCAGTTGAAACAATGGAAAATTCCTCACCATCTACAGAAGAGGCTTTGTTGAAGCAAAATCTTAAGGTTAATTCTATGGCAAGTTTGTTAATTCTAACCTTCCTTAGCAACGGATACACTGTAAGCAAATCTAAATATGTCCGAACACCCTTAACATTGACTTCACGCAAAGAGACTGACATCGATCTTAATCTACTAGATAATCCAAACAATGCACAAGCAGAAGACATGACTGAGAAAATGGACCAAGATGCATCACGTTCCGTTAAAAGTTCGTTTTCGTTATCAGATTTAGGAACGAAAGTCAGTGGTTCTATATCTACCACTATGACTATGCTCATTGCATTCACAAATGGTTGGAAAATGACATTAGTTGTTCTTGCTGGAATCCCGATCATTGGTTATGCTCAATCTGTTCAAAATGGTCAACCAGAGGAGGAGAAAACGAATGAGGAGGAAAACAATGGGATATTATCAAAATTGTGGAAAAAAATTCGCGGATTAACATCATCAGAATCAAGTAAAATACCAAGCGATTTTTCTTCTAAATACAGAGATGACTTTCTAAAACCTTATAGATATATTGTGAAAACGCTGATTGCAACTGGTCTGGCCTTCGCGATTGCTGAAAGTGTCACATTTCTTGTTTATGCTGGATCTTTGAGATATGGAGGTTATCTTGTGCGCAATGGAGAAATGACTGTTGAAAGTGTCATGACAGTTCTTATGACGGTGTTATTTGGAGGAGCAGGCTCGTCAAATGCTCCAGCAGAAACGTCAAAAACAAAGAATGAAACTTCAGATAAAGATCTACTTGATGATGTCAAAGTTCAAGAAGCCACAGCGGATGATAAAGCTGAAAAACTAGACGAGGTCAAGGGAGAAGTAGAGTTCCATAATGTTGAGTTTCATCATCCCGAGAAGAAAAGTGTTCTTATGAGTGGTCTGAATATTTCTGTGAAATCATCAGAAACGTTAGCTTTTGTTGGTACAACTGATTTTAATAGTAATTCCGTCATTGCATTACTAGAAAGGTTTTATGATCCAGCCGAAGGATCTGTTACTATAGATGATATTGATATTCGTAGTTTGGATGTAAGATGGTTAAGATCTCAAATGGCAATTGTATCCGAGTCAGGTGTCCTTAGTCATCATTCAGTGGCTGATAATTTATTAATTGGGCAGAGTGAAAGACGTTTAACCAATGAACATCTTGAAAATGTATCTAAAGTAACTCATTTGCACGACTTCGTTAATTCTTTACCAAAGTCCTATGACTCGTTGGTCGTCGATGATGTCATTCTGAACAACATAACAAAACAAAAACTTGCAGTAACTCGAGCGATCATTCGAAGTCCAAGAATTGTTATCATTGATGAATTTTCCCAAACAAGCATGGAAGTCCAAGAGTCTTTAAAAAGCCTTTGCGTGAAAAGAACATGTATTATTTTTGCTCGACATTTATCAACTGTTGAGAAAGCTGACAAAGTAGTAATTGTTTATCGTGGTAGAGTTGTTGAACAAGGACCACGTGAAGAACTGATGGCAAGAAGAGGACTTCTTTATCACTTGATGAACACTGAACTACCTTCTGATGTTGCTCCAGCACTTTAA

Transcript

Csp0G003370

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05658	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1	EC:7.6.2.2	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.