Gene detail

Detailed information of Csp0G024300 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00077:58605...82284
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G024300

ATGGCGGCTGGCTATGATGAAAATGTACTCGAAAATCCATTCTTCAAGACTTTGAAAGGGAAATACCATCGAATTTACGAAGATACATCTGCCAAGCGCCTAACAATTTGTGTACCTCGTTATGGATCATTAGGTCGAGCTGTACCTACATTGAATGATATTGAGAATCATATTCTAATTCCATTGCCAAACAATGAAAAGTCCTTTGAAACACTTAACAAAAGAGAAGTGATTGTGGATGGACATTTACTTCGGACATCATCTGGGTTTCACGATGTCAGGCAGGTTGAGATTTTATTTGAAGAAACCTTCTTCAATGCAAATAAGGAGAGTTTTAGTATCTTGTGTATCGAGAGACCACTTGAAGGAGGAACAGGGCTAAGTACCAGTTCTCTTGGTCCCTTGGAAACAATTCAGGATTGCATCGAGTTTCTTTGGCCTCCATACGGTGGTCCTTATACTTCCAAACAAAATGTTGATCATTATTTGGAATCCTACCAATCTACCTGGAGTGTGGAGTTTTCCCATTTAGGAGAACTTATGGGGAACATCATATCCATCCTAAACAAGCTATTTCCCATTGTGATGAAAGAAATCCATTTGCGCAAACCTGCTAAAAGTGGAAATTTTACGGAGACAATAAAGCTAGCTCTAGAGACATATGCTCTTCATAAATTACACGAAAAACTTTTCCCTGCCATTTGTTCGCTGTGTTCCGCAAAGGATGCATCATTCAACAAAGTTGTCCGTAATCTCTCTGATATACAGCTTAAAGATCTTGGTATCAAGCCCGCGCTAAGGCAAAATATTCCTGTGGCTAGACGAGCACTGTCCACTTTAAACCATTACACAACTCCACTGGAGAAATTCAACTGTTTAAAACGAACCATCGCCGGTGTGACCATGTCGAAAGAAGACAAAACTCAAAGCAAAGTTTTGGCTGTGACTGCTGATGATCTTCTTCCAGTGTTAGAGTGTCTTGTGATAAAATCAGAGTTACCAAATTGGATGGCTAATTTAACTTATTTGCACAACTTTCGGTTTTCAAATAGAACCTATGATGAATTTCGATTTTACATGTCTTCCTTCGAAGCTGCTGTTGAGTATATCCGAAAGTCCCATCGTAAGGACAGAAGACTGGATGTTTCTTTAAAACCGAAATTCATTGACCCCACCTTCCATGAAATGTTGACTGAAAGTTCCACGCAAGAAAAAATAAGTGACGCACCAATACAAGGACCATCACCATTGGAAGTGTTCTTTCAGCATGTTACCAACTGCCATGATTCCGAAGTGAGAAGGATCTTAAACAGCAGCTCAACGCGTGTCAAACTTTGTCATCCACTCTGTTCCTGTGACCATTGTGAAAAAGTTTTGGACAGGCACAGAAACGACCCTGAGGCAATAACAGTATTTTCGAGAGATGATTTGGGCCGTACAGCACTCCATATGGCGACGGATTATGGCCATACAAGCACCATACACTTGTTAGTTCAAAAAGGATGTGTTGTGAATACGACAGACTACCATGGCAGTACTCCACTTCATCTGGCTTGTCAAAGGGGCCACCAGCAAGCAACGATGTTGTTGCTTCATTACAATGCTGATATATTGGCGCAAGATAACGATGGAAATACTCCTATTCACCTCTGTTGTTCCAACGGTCATGAAGAATGTGCCAAAGCCCTTGTATATTTTGATCTGCACAACGAAGACCTCGATGTTGATGCTGCCAACAAACATGGCGACACTCCTTTGCACCTTGCGGCAAGATGGGGCTTCGAGAATATCGTAAAGCTGTTGATGGACAACAGTGCATCGTGTCACATTGTTAATAAAAGAAATGAAAAGCCACTGGACTGTGCTTACAATTTACAGATCAAGAGATTGTTAGGTACAGACCTTGAGTCGCAATATGTTGTAATTGCTGAGAGCGTTACACAAACCAGAGTACGTACTCTATCATCTACCGACATTGATAAGTCAAAAAGAATCGAGCCCAATCAGAGTCAGATTGAGGGCTTCTTGAAGACTGTCTCAGAGGGAGATATTAGAATGGTTTATCACAAACTTGGTTTCGAAGATGAATGGGATGAGGACGAAGAGGGTTCACAATCACCAAGAGATTCCGCTCCAAGCTTATGTCATCCGCTTTGTCAATGTGAAAAGTGCAGGAAATATCAACAGAATCTCACTCCGTCACCCTACCGAAAAGTGGACATCAATAGCCGTGGTCTTGATGGTAATACTGCTCTCCATCTGTCGTCCCTGTATGGTTTTGAACAAATCACTAACGTTCTTCTCAAGCATGGTGCTAATCCTAACATAGCTAACTACAACAGGAAATGTACACCTTTACATCTTGCTTGCCAGTATAATCATCCCAAGGTTGTTTCTATACTTCTGCAACATCACGCTGACGTTGACTGTCAAGACATTAGATTGAACACCCCTTTGCATTACTGTTGTCAAAATGGGAACATCGAACCAGCGATTATTTTAATTAAGAATGGTGCTGTACTGAACATTGTTAATGAGCGCGGGAATACGCCATTACACGATGCGGCCAGATGGAGTTGTATTGACATTGTTCACTTGTTGATGGAAAACGACGCACCGTTGAATATCAGGAACGTCCAAGGTTTGACACCACTCCAAATGGCCAAGCACGATGACATTGTTAAAGTTTTAAGTGAAGGAAGTAGCCATGAAACTTCAGAAAAATATTACGAAAATAAAAAGCGAACGGCGCCTCCGAAACATTGGCACCCGTCAACCAACCAAATGGCCGCGACGGTTAGCGATAAGGACATCGCTTCTTCCTCGTCCCTTTCTCAAACACAAGAACGAAACGACCTCTTTCTCAATACTCCAAGCAACGAGCAGCCATTTTCTCGTACCAATCACTCGACTCTCTCCGAAGACCAAGACTCGCCAATGGGTCCAACGTCATCATTTTTTGATCGTAAATCACCGGAATTGTTCTCGTCATCAAGTATCTCCTCGTCCTTACCTCAACCGACGAGTGATGTCCCCTTTCCAAGAAAATTACCAGAGATTAACAATAAGACAAGTGAAGATATTGACCACCGCGCTGTCGCCATCGAGAGTCTACAGCAACTGCTGGAAGGGATACAACTTTTCGACAGACATTCAAGTTTAAGAAAAACAAAAACAGTTGACAAAAGCGAACCATTGACCAGTCCACTTCTCAAATTACAGTTTTCGATACATCACTTTGACCCATCGCGGCTTAAAAGAGTTCCCGATATAATTGAGTTCGAGGGAAACTCCGGTGAAGCAGGAATTCATAGTGACATTGCAGGAAAGAATGTCGAAAACAGGACAGCAGATGTTGACGAGGGAACACCAGGGGTAATTGGTGACTAG

Transcript

Csp0G024300

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051248 all species →	Family	UPF0507/Ankyrin repeat domain-containing protein 27	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan
IPR003123 all species →	Domain	VPS9 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24170 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030133 all species →	Cellular Component	transport vesicle	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0048812 all species →	Biological Process	neuron projection morphogenesis	Interproscan
GO:0097422 all species →	Cellular Component	tubular endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20175	ANKRD27; ankyrin repeat domain-containing protein 27	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.