Gene detail

Detailed information of Csp0G043660 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00099:6341317...6342402
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01498 all species →	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002492 all species →	Domain	Transposase, Tc1-like	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR052338 all species →	Family	Transposase_5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23022 all species →	TRANSPOSABLE ELEMENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006313 all species →	Biological Process	DNA transposition	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07482	K07482; transposase, IS30 family	-	Replication and repair	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.