Gene detail

Detailed information of Csp0G045290 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00101:737270...747751
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G045290

ATGTCTATCAGACCTGGTGACGAAGGTTACAGTAGTCGTCAAAATGATGGTTATCAAGCCAACTACCCTTACAAAGATGAAGCTCCGGCGAGACGTGATTACGAGAGAGTTGAGAGCAGTGAACGAAACAATTCTAGAATAAAAGAGGAAAGTCCAGAGCAGTACCAGCAAAGCCGTCACCCTGTAGTCAAAGCAGCTAAGGACAGTGACAGCGGGCAAAGTGGAAGTGGAACTGCAATATCTGGCAGTGGAAGTGACTCCAGTGATAGTGGAGACAGTGACAGCGAAAGTGATAGTGATTCCTCCGTCTCCGAGACCTCGAAGGCAGTGAAGAAAACAAAGGCATTGCAAATTCGAAATCTATCGTCAAGATCAACTGATGCAACAATCAGAGAAGGCTTGTATCATGAATTTAAGAAGCATGGTGATGTAGGACACATCAAGGTGTTGGGAAGAGACAACAATAGACATGCCATTGTGTGTTTTAGAAGGCATGAAGATGTGACGAAGGCAATGGACAGTTGTAGAGGCAAAATGTTTCTTGGTCTTGAAATGGAACTTACTCCATGTGAAGATGATGAATATGAGGGATCATTCCATCATTACCGTCGTCGTAGCGAGGGAGCGAGTTCATCTTTTGGAAATGCCGATGATGTTTATATGTTTAATGCCACCAGGACTATATTTGTTGGAAATATTGAAAGAAATGCCACCTCGTCGGAACTTAAGAGAATGTTTGAACGATATGGAGAGATTGTGGATGTCGACATTAAGAAACAAGGTAGTAATGGAGCTTACGCTTTTATTCAATATCTTGATATAACCCACGCAGTGGAGGCCAGGAAACAAATGAATCGTGCCCTCTCAGGACGTAATAGATTAAAGATTGGCTTTGGTAAAGGAATGCCAACTAGCACAATCTGGATAGGAGGTCTTGTACCTACTGTTACCGAACAAATGTTAGAACGTCACTTCCAGCGGTATGGCCGCGTGAACCGCGTGGGCCTGGATCAAGAGAGGTCTTATGCTATGGTTACGTTTGATAATCTTGATGGATCTACGTTGGCTCATAATGACGTCAAGAGCCGAGCTATTTTTGGAAAAAGAGTACGGGTGGACTACGCTAGTCGTGAGAGCCAACATTTCTTCTACGACCATCTCGCTAGCACTGGTCAAGGAGATGGTCGAAGATATGAACCATCGCCTCCTCAATCTCATAGACCACGTAGTAGTAACAAGAGTTACGAAGAACCCACGGAACGATCTCGTACGACGGGGATAAAACAGGATAATAGAGGATCAAAGTACCACCCTTATGAGCATGGTTACGAACGTGGACCGGGCTTCAACGAAGGCGGACGACGACATTACGACGAGTATTACCGAGGACCTCCACCCGCAGGTGGCTACGAGAGTGATGATTTTGGTCAGGAGTTACGCGAGTATAACGTGACACGCGAGCGAGAACGCGCGCGGGAACGCGAGCAAGATCGTCAGCAAGATCGTCGTCAGGAGCCGCCACCGCCACGTCGTCGACATCATCGGGAGACGACGGGTCGCCACGAGGGAAACACGGAGAGTGACGGCGAACGATATTACTCCCGCGGGGAGCATTCCGATGTTTGGCCGGGTGATAGCGGGAAGGACCGAGGGTCGAGGGAGTCGAGCGTGGAACCAAGAGACGATAGTCATAGAAGAGGGGATAAGAGGAGAGATGGGGATAAGAGGAGAGAAGATTTGGAGCCCATTGAAAAACAACCCCCCGAGAAGAAAGAACACCGGGAAAAGAATTTACGGAAGAAGCCGATGGAACCACGAGAAGATTACGGAAAGCCCGAGTTTTATCCGACGAGTTACGAGATAGGCTACGATGGCAAGGAGAAGGATGTTACTATGAAACGTGACGTAAAACAAGAGAGAGATATTCATGGGGGTACGTCTGCTGAGGAAGGAGGAGGAAAAGTGTCGATGGAAGAAGACAAAGGAGATATTATTTTGAAAGAAGAGAAAGTGCGCAATAGAAAGGAAGAACGGAGTGCAGAAAAGGCGCTGAAGAAAATGAAAAATAAAGACGGGAAAAAGAAACGGAAAAACAAGAAGTCACCGGTTGAAATACCCCCGGCAAGTGTTCCCTCTACACAGGTAGACTCTGATGGCGTCAATGAGGGAACACCTCGCTTGTCGCGGGACAATATCCCGCAATCTCGCGTGGAGATACCGGAGTCGCGCGTGGAGATACCGCAGTCGCGCGTGGAGATATCACAATCACGCGTGGATATATCACAATCACGCGTGGAGATACCCCGATCGCGTGTGGAGATACCTCAATCACGCGTGGAATTATCGCATTCACGCGTGGAGATACCGCAATCGCGCGTGGAGATACCGCAATCGCGCGTGGAAATACCGCAATCACGGGTGGAAATACCGCATTCACGCGTGGAAATACCGCATTCACGCGTGGAAATACCGCATTCACGCGTGGAGAAACGTGAAGAACCGATTAAAGAATACAAGAAGGCGAGAAAATCAGGTGCTAGCCTTAAATCTGCCGTCGTCGTTAAAAATATTTCTGAGAATTCTGATAAGGACCGAAGGCAATATCGTGACAACCGTCGGCCCAAGTCGCCTAGTCCCCAGGACCACCCGGAGGAACATATTTCCCGGAAACGCCCTCGTTCACCGGAACGCGACGGAGAACACCACCACGCGAAGAACACCAAGCATGCGGATTCTGGTCGCAATAGTAACGGTGATTACGACGACCCGAAACGGAAGAAACGACGCCAGTCTAACGAAGCAACACCTCCCCCACCGCCGCCTCCACCACCTCCCCACCATCACACTTCAAGATCAACACAACAAAGTGATCCAAGAAAATTTGCCAGAGAAAGAAACAAAGATGTTTCGTCGAGTTCTCGTGACCCCACGGCACATGCTCCGCCTAGCAACGTCGGACAGTCGGCATCGGATCGGTCGACTCGGGATACATCGACATTTAAACCACGTGTCTCTGATACCGTCCCAGGTGTCTCTTCGGCCGAGACAACGAAACACGTGACCTCAGCCCAGATTTCAAGCAATACGTCACCGACCGACTCTCCTGTGCCCGCGCAGACCGGAAGTGGCCCGTTGCCGAACAGTGACGACACCTTGATGGAGCTTTTGCGACGTCATCCGGTGATGTGGCAAGGCCTTCTGGGGTTGAAAAACGACTCTGCTGCCATTCAGATGCACTATGTTTCCGGGAACTCAAAACTCGCCGAGTATTCGTTGCCAAAACCGAGCGGAGGGATTGGAACGAATGGGCTTGCCATACCTGCTGTATTGAGGATAGCTCAGAGAATGCGAATGGAGGCTTCGCAATTGGAGGGTGTGACTAAACGAATGCAGCTTGAAAAAGAACACTGTCTTCTCTTGGCTTTGCCTTGTGGGAGAGATCCACTGGACGTGCATGCGCAGACGAGAGCTCTGAAGAACGGCTTTATTGCGTATCTTCAACAGAAACTAGCAGCTGGAATTATTAATATCGCTCAACCAGGAAGCCAACAGGCAAGCTTTGTTTTACACGTCTTCCCTCCCTGCGACTTCACACATTCTCACTTATCAAGAGTTGCTCCCAACCTCCTGGACAGCGCCACTGACTCTGGACATCTTATGGTCGTCGTGGCAACGGTCTAG

Transcript

Csp0G045290

GGATTTCTGAAATTATTATCTTTCATGGAAATTTATTAAATCAGTTGTAAGAATGTCTATCAGACCTGGTGACGAAGGTTACAGTAGTCGTCAAAATGATGGTTATCAAGCCAACTACCCTTACAAAGATGAAGCTCCGGCGAGACGTGATTACGAGAGAGTTGAGAGCAGTGAACGAAACAATTCTAGAATAAAAGAGGAAAGTCCAGAGCAGTACCAGCAAAGCCGTCACCCTGTAGTCAAAGCAGCTAAGGACAGTGACAGCGGGCAAAGTGGAAGTGGAACTGCAATATCTGGCAGTGGAAGTGACTCCAGTGATAGTGGAGACAGTGACAGCGAAAGTGATAGTGATTCCTCCGTCTCCGAGACCTCGAAGGCAGTGAAGAAAACAAAGGCATTGCAAATTCGAAATCTATCGTCAAGATCAACTGATGCAACAATCAGAGAAGGCTTGTATCATGAATTTAAGAAGCATGGTGATGTAGGACACATCAAGGTGTTGGGAAGAGACAACAATAGACATGCCATTGTGTGTTTTAGAAGGCATGAAGATGTGACGAAGGCAATGGACAGTTGTAGAGGCAAAATGTTTCTTGGTCTTGAAATGGAACTTACTCCATGTGAAGATGATGAATATGAGGGATCATTCCATCATTACCGTCGTCGTAGCGAGGGAGCGAGTTCATCTTTTGGAAATGCCGATGATGTTTATATGTTTAATGCCACCAGGACTATATTTGTTGGAAATATTGAAAGAAATGCCACCTCGTCGGAACTTAAGAGAATGTTTGAACGATATGGAGAGATTGTGGATGTCGACATTAAGAAACAAGGTAGTAATGGAGCTTACGCTTTTATTCAATATCTTGATATAACCCACGCAGTGGAGGCCAGGAAACAAATGAATCGTGCCCTCTCAGGACGTAATAGATTAAAGATTGGCTTTGGTAAAGGAATGCCAACTAGCACAATCTGGATAGGAGGTCTTGTACCTACTGTTACCGAACAAATGTTAGAACGTCACTTCCAGCGGTATGGCCGCGTGAACCGCGTGGGCCTGGATCAAGAGAGGTCTTATGCTATGGTTACGTTTGATAATCTTGATGGATCTACGTTGGCTCATAATGACGTCAAGAGCCGAGCTATTTTTGGAAAAAGAGTACGGGTGGACTACGCTAGTCGTGAGAGCCAACATTTCTTCTACGACCATCTCGCTAGCACTGGTCAAGGAGATGGTCGAAGATATGAACCATCGCCTCCTCAATCTCATAGACCACGTAGTAGTAACAAGAGTTACGAAGAACCCACGGAACGATCTCGTACGACGGGGATAAAACAGGATAATAGAGGATCAAAGTACCACCCTTATGAGCATGGTTACGAACGTGGACCGGGCTTCAACGAAGGCGGACGACGACATTACGACGAGTATTACCGAGGACCTCCACCCGCAGGTGGCTACGAGAGTGATGATTTTGGTCAGGAGTTACGCGAGTATAACGTGACACGCGAGCGAGAACGCGCGCGGGAACGCGAGCAAGATCGTCAGCAAGATCGTCGTCAGGAGCCGCCACCGCCACGTCGTCGACATCATCGGGAGACGACGGGTCGCCACGAGGGAAACACGGAGAGTGACGGCGAACGATATTACTCCCGCGGGGAGCATTCCGATGTTTGGCCGGGTGATAGCGGGAAGGACCGAGGGTCGAGGGAGTCGAGCGTGGAACCAAGAGACGATAGTCATAGAAGAGGGGATAAGAGGAGAGATGGGGATAAGAGGAGAGAAGATTTGGAGCCCATTGAAAAACAACCCCCCGAGAAGAAAGAACACCGGGAAAAGAATTTACGGAAGAAGCCGATGGAACCACGAGAAGATTACGGAAAGCCCGAGTTTTATCCGACGAGTTACGAGATAGGCTACGATGGCAAGGAGAAGGATGTTACTATGAAACGTGACGTAAAACAAGAGAGAGATATTCATGGGGGTACGTCTGCTGAGGAAGGAGGAGGAAAAGTGTCGATGGAAGAAGACAAAGGAGATATTATTTTGAAAGAAGAGAAAGTGCGCAATAGAAAGGAAGAACGGAGTGCAGAAAAGGCGCTGAAGAAAATGAAAAATAAAGACGGGAAAAAGAAACGGAAAAACAAGAAGTCACCGGTTGAAATACCCCCGGCAAGTGTTCCCTCTACACAGGTAGACTCTGATGGCGTCAATGAGGGAACACCTCGCTTGTCGCGGGACAATATCCCGCAATCTCGCGTGGAGATACCGGAGTCGCGCGTGGAGATACCGCAGTCGCGCGTGGAGATATCACAATCACGCGTGGATATATCACAATCACGCGTGGAGATACCCCGATCGCGTGTGGAGATACCTCAATCACGCGTGGAATTATCGCATTCACGCGTGGAGATACCGCAATCGCGCGTGGAGATACCGCAATCGCGCGTGGAAATACCGCAATCACGGGTGGAAATACCGCATTCACGCGTGGAAATACCGCATTCACGCGTGGAAATACCGCATTCACGCGTGGAGAAACGTGAAGAACCGATTAAAGAATACAAGAAGGCGAGAAAATCAGGTGCTAGCCTTAAATCTGCCGTCGTCGTTAAAAATATTTCTGAGAATTCTGATAAGGACCGAAGGCAATATCGTGACAACCGTCGGCCCAAGTCGCCTAGTCCCCAGGACCACCCGGAGGAACATATTTCCCGGAAACGCCCTCGTTCACCGGAACGCGACGGAGAACACCACCACGCGAAGAACACCAAGCATGCGGATTCTGGTCGCAATAGTAACGGTGATTACGACGACCCGAAACGGAAGAAACGACGCCAGTCTAACGAAGCAACACCTCCCCCACCGCCGCCTCCACCACCTCCCCACCATCACACTTCAAGATCAACACAACAAAGTGATCCAAGAAAATTTGCCAGAGAAAGAAACAAAGATGTTTCGTCGAGTTCTCGTGACCCCACGGCACATGCTCCGCCTAGCAACGTCGGACAGTCGGCATCGGATCGGTCGACTCGGGATACATCGACATTTAAACCACGTGTCTCTGATACCGTCCCAGGTGTCTCTTCGGCCGAGACAACGAAACACGTGACCTCAGCCCAGATTTCAAGCAATACGTCACCGACCGACTCTCCTGTGCCCGCGCAGACCGGAAGTGGCCCGTTGCCGAACAGTGACGACACCTTGATGGAGCTTTTGCGACGTCATCCGGTGATGTGGCAAGGCCTTCTGGGGTTGAAAAACGACTCTGCTGCCATTCAGATGCACTATGTTTCCGGGAACTCAAAACTCGCCGAGTATTCGTTGCCAAAACCGAGCGGAGGGATTGGAACGAATGGGCTTGCCATACCTGCTGTATTGAGGATAGCTCAGAGAATGCGAATGGAGGCTTCGCAATTGGAGGGTGTGACTAAACGAATGCAGCTTGAAAAAGAACACTGTCTTCTCTTGGCTTTGCCTTGTGGGAGAGATCCACTGGACGTGCATGCGCAGACGAGAGCTCTGAAGAACGGCTTTATTGCGTATCTTCAACAGAAACTAGCAGCTGGAATTATTAATATCGCTCAACCAGGAAGCCAACAGGCAAGCTTTGTTTTACACGTCTTCCCTCCCTGCGACTTCACACATTCTCACTTATCAAGAGTTGCTCCCAACCTCCTGGACAGCGCCACTGACTCTGGACATCTTATGGTCGTCGTGGCAACGGTCTAGAACACCCCCAAGGCACATGGACTACATGTGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF07744 all species →	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR010912 all species →	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR012921 all species →	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G045290.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.