Gene detail

Detailed information of Csp0G046990 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00101:3515917...3585242
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G046990

ATGGAACCACTTACAGTCGAACCTGTATTAAGCGGTCACCCTTGGGAATTGCATAGAATTTGTGTTCAAGATAATAAAGAAAGCAGCACTTGGTTTGATGCTGGCTTTGAAATAGACGATCCAGAACAGAATGTTTGTGGTCAAAGTAAAAAACGAAATCTTGAACATTTCACAACCTGTTTACAGAATGCAATTTCGTCAGTGGAACCTGAAAATGGTGGTGGGGAATTGACTATTAAATTACCAAAAGAATTGAGCATTGAATTCTCGCTTGAGCATCCAAAAGGCGGAATTCAATTTGTCATCCCTGCTGGCGATGGCAGCATGTTGGAGAGATCTGCTCATATGTTTTCATATAACCATGGGAACACATCTAGGCTTTGGTTTCCCTGTGTGGACTCTTACTCTGAAGTGTGTACCTGGAAAATTGATATTACTGTTGACAAAGACATGACGGCGGTGTGTTGCGGTGATCTTGTAGAACAGGTCTACACCAGCAATGAAAAATATAAAACATTCTCGTATGTGTTAGACATTCCCATGGCAGCACCAAATATTGCATTAGCTGTAGGCCCATTTGAAATTCATGTGGATCCTGTTATGCCCGAAGTAACTAATTTTTGCCTACCTGGATTACTTCCATTATTAAAACACGCCACTGGGATGCTTAATGAGGTTTTTGAATTCTACGAAGAATGTCTTAGCTGTCACTATCCTTATCCAAACTATAAACAAGTATTTGTGGACAACGCCTTTGAGAATGTATCTTCTTACGCCACCCTTGCCATATGCAGCACGAATCTGCTTCATTCGTCTCGGATAATCGATCAGACGTTTATGACGAGGAAGTGCCTTTCGCTTGCCTTGGCACAACAATTTTTTGGGTGTTATCTATCTATTCACACATGGTCAGACGCGTGGCTTCAAGCTGGCATAACTGTCTATTTGTATGGTCTTTACGTGAAGAAAGCGTTTGGGAACAACGAATACCGCGACTGGATACGAGAGGAGATGAAAAATGTTTGTCAATTTGAAATTGATGGTCCTGGTTTGTCTCCACTGCACAATAAACGTTCCGTAGAAACGGCTGGGTCCGAGGGGAAATCCAGTGATCAGCCTGAAGTATCGTTCTACCAGCCAGGCTACTTGCACATGCATCCTCATAGTACGTCATGCAAGCAGATAGAAGCTGCCACTAGTAAAGCTCACCTTGTGATGAGGTTGATTGAGATGAGGATTGGACAAGAACCGTTACTGCAGGTTTTTAACAAACTACTGTCACTTGCAAAGACTGCTGTAAAATCTAAATTCGACCTGAGCTCTTGGGGAAACATGCTTTTGTCAACAGCTGGGTTCCTTCGTTCAATTTCTATCGTTTCTGGCAAAGACCTTAAAGTTTTTGTTGATCAATGGATACATAGAAGCGGAGTTGTCTGTTTTTCTGGTACGTTTGTGTTTAATCGCAAGAGAAATATTGTGGAGCTGGATTTAAAGCAAGATCTAAGAAGAGGAACGCTTAAATATATGGGACCTTTGACAGTTTGTATTCAAGAACTCGATGGCTCATTCAAGCATACAGTTCAGATTGAAGATTCGTCAACTCACCATGAACTACAGTGCCACTCCAAGAGTAGACGAAACAAGCGCAAAAAGATTCCTCTTATGACTGGAGAAGAGGTTGATATAGACCTGGATACAATGGATTCCGATTCGCCGGTGCTATGGATCCGAGTGGACCCAGAAGTGAACCTCATTCGTCAGGTGAACTTCGCACAGCCTGATTTTATGTGGCATTTTCAGCTGAGACACGAGCGTGATGTGATTGCCCAAGCCGAGGCTATTGAGAATTTAAAAGGATTTCCCACACGCCAAACAATGGAAGCTTATATTGATATAGCGAAGCAGAAGGAATGTTTTTACAAAGTCCGACTTCAAGCAATCGAAAAGCTAGCCAAGCTCAGTAATGTTAGTGATGAAGCGTGGAATATTCATACGTCGATGATCTCCTTATTTCAAGATATGTTTGGGTCTCAAGCATGTTCCACCATAGTTAGATACAATGACTTCTCCAATTTTATTGATTATTTCGTACAAAAGGCGCTGGTTTCTTGTATTGGTTTTTGTAGAGATGTTCACTCACAATGTCCTAAAGCTGTTGTGCAGTTCCTTTTTGACCTATTAAAATACAATGACAATCGATTAAACAAGTATTCTGACAGTTATTATGTGAGTGCAATCATAAGTGGATTGGTTAATACTATAACTGCGACAGTACTGTTAGGAGAAATAACAAAACATTTGAACATTGAAAAATTACTTCCATCATATAAATACGCTGTGACAAAAAGTTGTATAAAAGGTCTGCGAATTTTACAAACTAATGGCCACATTCCTTCAGATCCTGACGTTTTCAAGTATTTTGCAAGGTTGGGGCATTTTGAAGATATTCGCCTGACGGCAATGGAGTGTTTGGTAGACTTCGTCAAAGCTGAATCAAGCAATGATATTCTTGAATTAGTGTTAAATCTGGCTGACGAAGAACCTTCATCGAATATAAGTCAACCTGGTACCCAGGTTCATTTCCGAGCTGAGTCCTGGAATTGTCCTGGTACATGCAAAACTAAACTGTGA

Transcript

Csp0G046990

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR037813 all species →	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G046990.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.