Gene detail

Detailed information of Csp0G071900 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00138:1671637...1728314
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G071900

ATGGCATTGTTTTCCATTGCTTTGTTATTCTTTATTCTATCTCAAAGACAGCCGGTTGTTTCTGCCGATGACGACGACGACGACCTCCGTAGATTTGACTGCTACCCGGAACGTGCAAGCGAAGGTGAACAAACTGTCAACCAAAGTTTGTGCGAGGCAAGGGGATGTTTGTGGAAAGAGCCAGTCAGCGACAAGAAAGCTCCATGGTGTTACTACCCTGGTAACGCCAGCTCCTTCAGTGGCTACTTATTGGTGGCACAACAGTATCACGAGGACTCCCTCACCCACTTCTATTTTCTGCGACACCAAGGCAAGCAACCGCCGTACGGAAATCACTCCGAGAATATCACCGTGTGCATCCAACAACGGGAAAACGACGTCTTACGAGTAAAGATACATGATAGTCACGATCGTTATGAAGTACCTATCAGAATATCTGAACTGGCTACAGGACAAAACCCAATATACAGAGTTGAAGCGAAAAGATTCCCATTCTCTGTTAAAGTAACGCGCAAATCCGACGGTCAAGTAATATGGGATACTTCTGTCGCACCAATGGTGTTTAGCGACCAGTATTTGCAAATATCCACACGATTACCTTCCAGTTTTCTGTATGGCTTTGGAGAACACGAGCAGACCACTTTTAGGCGATCACTGAATTGGACAACATTGGGGATGTTTTCACGCGATCAATTTCCGTTTTCGACACCTGGTAGAAATGTCTATGGTGTTCATCCATTCTACATGAACTTGGAAAAAAGTGGAGTTGCAAATGGGGCTGTGTTAATTAACAGCAACGCTATGGAGGTTACTCTGCAGCCAACTCCAGCCCTGACCTATAGAACTATCGGTGGTATACTCGATTTTTATATATTCCTGGGTCCGACGCCAGAAAATGTTATTCAGCAATACACTAAGCTTATCGGCCGAACATTCATGCCACCCTACTGGAGTCTTGGTTTTCAGTTGTGTCGCTATGGTTACAAAAATCTTGATGAAGTCAAGGGGGTTGTGGCTGACATGAAAAAATATGGCATACCTCAGGACGTTCAATATGGTGACATTGATTATATGGAAAGGCAGTTAGATTTTACTTACGATAAAGCATTTGATGGCTTACCTGAGTTTGTGAAGTCGATCAAGGAAGACGGTCTGAAATACATCATTATTTTGGATCCTGCCATTAGCGCCAACGAAACCAAGCCATACTCCCCTTACACAGAAGGAGTTAAGCAAGATGTTTGGATAACAGATGCCAATGGAGAAATATTGTTTGGAAAGGTTTGGCCAGACTATCCAAACGTTACCCTTAATAGTAGTTACAAATGGGAGGAACAGATTAAGTATTTCAGGGCCTTTGTGGCCTTCCCTAATTTCTTCTCGAAGAAAACTCAAGTGTGGTGGAAAAATGAAATTGAAAAGTTTCATAAAATCATTAATTTCGACGGATTGTGGATTGATATGAACGAACCAGCCAATTTTGTGAAAGGCTCTGTGAATGGTTGCTCCAAGAACAAGTTTGACAACCCCCCTTATAAACCATATATTCTTGGTGACGTTTTAGCTGATAAAACTATATGTATGAATGCTATCCAAGGTGAATATCGTCATTATGATGTTCACAGCCTTTATGGATGGAGTCAATCTGCCGTGACACAACCAATTCTTCGGAACATAACAGGAAAAAGAAGCGTTGTGATATCAAGGTCGACGTATCCCAGCAGTGGAAAGTACTCAGGTCACTGGCTGGGAGACAATCTGTCGGCGTACTACGAAATGCATCGCTCTATAATTGGAATGCTGGACTTTAATCTGTTTGGAATACCATATATCGGTGCGGATATTTGTGGTTTCATAGATGATACTGAAGCACGTTTATGTCAACGTTGGATGCAGCTTGGCGCGTTTTATCCGTTCAGCAGAAATCACAACACCTTTGGTGCTAAGGCTCAGCATCCAACTGTGTTTGGCGAAGCAATCGCCAAAAATTCTAGAGACATCTTGCTGGTCCGCTATCGACTTCTACCATACCTTTATACGTTATTTTACGAAGGTCACACGAAAGGAAACACAGTTGTAAGACCACTGTTGAACGAGTTTACAGACGAGCGCGAGACATGGGATATCGACAGACAATTCTTGTGGGGTCCAGCTCTGCTCATCAGTCCAGCATTGGTTGAGAACCAAACTGAAGTAAAAGCATATTTCCCAAATTCCCGCTGGTTTGATTATTTCACAGGAAAAGAAGTATCAAAGAAAGCAGGATATGTGACACTTCCCACCCCTCAAGAACACATAAATTTACATCTCAGAGGTGGTTACGTCATCCCTGTACAAGAACCTGCCAACAATACGTTTTTCAGTCGACGCAAGCCTTTTGGTGTGATCGTGTCTTTGGATTCTTCTGGCAGTGCAACTGGAAATTTGTTCTGGGATGATGGTGAATCTATAGATTCCATTACTGACAAGAAGTTCCTTTTGGTGACTTTTACTACCAGTAAGAATGTCTTGACAATGAAACCAGAGATACGTGGCCTTGATGTTCAACCTCTCCTTGAACATATTGTTATATTTGGTGTTCTGGGAGGAAAAAGCACGGCTTCTCAGGGTAATTCTCATTATGACTCCAATAAAAAGTCACTTAACATCACTGGATTGAAGTGGAAAATGAATGACTGCCATCAGATATCGTGGTCCGCAGCAACCTCCATTCCTGTCTACATCAAATTCAATACGTTCATTACATTTGTTGGCTGTGTCCTAAAGGGAATGATATAA

Transcript

Csp0G071900

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan
IPR030459 all species →	Conserved_site	Glycosyl hydrolases family 31, conserved site	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR030458 all species →	Active_site	Glycosyl hydrolases family 31, active site	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004558 all species →	Molecular Function	alpha-1,4-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G071900.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.