Gene detail

Detailed information of Csp0G075690 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00143:408338...415053
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G075690

ATGACATGTTTTGATATATATTTTTCTGTTTATAAAACCATCCAATATTTCTCCCGCCAAAAGACCTACCTATACAAGCAATTCTTGGATGTTATTTCACAAATATTTTTCACTTTAGAGAAAACTGTGGAGACTTATGAAAAATTGTACACGGCTGATAGTCACTACGACTCCAAGCCAAGAATGAAACTAGCGCACGGCACTATGGGTATTAGCACTGTCGCCAAGTTCTCAATGCTCAGTAATACCCCAACGTTGTTCAAGGTAAAGCGACCAGGCCTTAAAAATGATACTAATACCGTATCATTTGAGTTAATGCAAAAGCCTGGACACTACCTCAGATATAAGAATTACAAGTTTCACGTGGAGAAGAAAGATAAGTCGAAATTATTTGAAAAAGATGCGACATTTCATGAACGACAAGGGCCTCGTGGGAGAGCCTATGAGCTGCTAGGACGAGATAATTGGTTCATTTGTCATTCAGAAGTCTCACCATTCACACTTAAAGTGAAATTAGAAAATATTGGTACAAAAGAGTTTGTTGAGAACTGCGTGTATGTGCCAGTGAAACAAGAACAAGGGCAGAAGAAAAACATTGTCAAGACAGTACCAAGTGGAGCGTCAATGATTGTTCATTCACTTCCATCAACACAAACAGCGGACAAGTGCATTAGTTTGCGGTTCGTCAACAAGCTAGGTGGTCCTGTACGTGTTGTGTCGAGTTTAAAACCTGAAGGTTACCTAGTAACGGCGAATGCATTTAAACTAAAGACGATCTTTAAACATGCGAACCACAAACAACGCCATGTTATATTTTATGCCGAGAATGTTCAAGATAGAGATGATGATGTATTGCTGAATGATAAGAATGTGTTCACTGTAAAACCAAGCGAATGCGGGAAGGAATTTCAAGATGTGCTATTATCATCACAAATTGCAGAAGAGTCAGCAATGGACGAGTCTACAACACCAAAACCTCAAGATTCAGGAACAAACCCGATGACGAAATCTACCAACCTACCAGAAAACTCAACAAATAACCTTGATTCTATGACCCAAGGTGTACCGCAACCTCCGACATCAACCGGCCTTATACCATCGGCGATAAACGACGACACACCGAAGTCACCAACGATAAACGACGACACACCAAAGCCACCGGCGATGAACGGTGATACACCAAAGCCACCGGCGATGAACGGTGATACACCAAAGCCACCGGCGATGAACAGCGATACACCGAAGACAGCGACGATAAACGGTGATACACCGAAGCCAGCGGCGATAAACGGTGATACACCGAAGCCAGCGGCGATAAGCGGTGATACACCGAAGCCAGCGGCGATAAACGGTGATACACCGAAGCCACCGGCGATGAACGGTAATACACCGAAGCTACCAGCGTATAAACCAAGTACAGAACTAGGAATAGCCAGTTCATCATTAAACACTGCTACACGTCAAGGAACAAACAAACTTCCTCTTGCTTCCGCAGTAACGTCTTCATCACCATCCACAATATCTGGTAAACCACTAACAGACACCTCAGGGAAAACCTCTCCAAGTAAAGCTAATCCAGACAATACACACTACAGTGCGCCACTAGAAAATCAAATACATAATCTGGATAATGTTCTTGGGAAGAAGATTCAAACAAATGTTGCTAGTGGTCCTGTTTTGGGAGAAAACCAGCGACATGTGATCAATGGATACGGAACTTGGTCGTCATTTGGACCTTGTAGTGTATCTTGTGGTGTTGGGTATCGAAGAAGATCCAGAGTGTGTAGACCAGGAGTGTATTGTAATAGAGGATCATCATCAGAGACAAGAGCTTGCATCAAGGAACAATGTGCTTCTAACTGTATTCACACAAATGGTGGTTCAGTACAAACTGGTTCCTGTTGTCATTTCCCATTCACGTATAATGGAGTTCAATATTATCAATGTATTCTAAGTCCACGTACTAACGAAAGACTATGGTGCTCCACTACACCTTACTTTGATCAAGATAAACAATGGGGGTTCTGTCCACAATCTACCAAAGCCCCAGTACGTTCACTTCCTAATCCAGTTCAACAAATAGCCACACCACAACCACTGGTTCCTAATATTGTACCTTCAAGAGAATACTCCTCATATGCCAACAGTGGAAGTTATAACGATCCTTACAAGCTGTATAAAACCGACTCTATCCCGTGTCATCCAATGTGTTTCCACTCTTGTGTAATTAATTGTCCAAAACATTGTTGTTTCTCACCAAGGGCTGATCTCCCAGTAAAGGCGTACATAGGTGGTAACTATGGAACAACAGACAGAAGAAACTTAATCTATCCCTACTATCCAAGATACAGAAGAAGTTTATCAAATAAATTAAACTTAAAGAAGCAATGA

Transcript

Csp0G075690

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF05270 all species →	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051666 all species →	Family	Seminal Plasma Capacitation Regulator	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR036195 all species →	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR007934 all species →	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22918 all species →	SEMINAL PLASMA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0046373 all species →	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556 all species →	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G075690.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.