Gene detail

Detailed information of Csp0G077470 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00143:2667193...2676553
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G077470

ATGGCAGTGGTTACTGAACTCCAGGCTGAACTCCTGGCAGCTCTGTTGAACAGTGGCGTGAACAGCGAGACAATCATACAAGCTCTGAAGGCAGGTGAAAGGCAAGCGAGACCTGAAAATTCCACGAAATTGGAGAAACTTGTGAACGGAACGAGCGAGGAACAGTCGTCGATGAACAGCTTCGCGTCCAGCTCTGGTATAAGGTCGACGGACGTACGCGACGAAATGACTCCATCGACGATCGTCGACCTAGAGACCAACGGACAATCCATAGCCGACCAGCTGATGAGAAATGACCCGTGGCAAAGTGCGAAGATTATTAAACAGTACATGCAACAGCACAATATACCACAGAGAGAAGCCGTTGAAACCACTGGTTTGAATCAAAGTCATCTTTCACAGCATTTGAACAAGGGTACACCAATGAAAACGCAAAAGCGAATGACGCTGTATAAATGGTTTGAAGCAAAGCAGAGGGAGGTCGCTGCACAGTACAACAGTAATTCTGGAAAAAGACTGGCTGAACACGACATAACCAGTCCTCTTTTCACTGGCACTTCCACCTACAAACGCGCCAGGAGGAACAGATTCAAGTGGGGACAGGCGTCAACTGAGATCCTTTATCAGGCATACGAGTCTCAGAGAAATCCATCCAAGGATGAAAGGGAAACCCTCGTGGAGGCATGTAACCGAGCGGAATGTGAACAACGCGGCATCCCGCTGGAGCAGGTCAACAACCTGGGGCCTAATTTGGTGACAGAAAGTCGGGTTTATAACTGGTTTGCTAATCGCAGGAAGGAAGAAGCGTTCAAAGTGAAACTCGCTATGGATGCTGGGACGTACCCTGGTTCGATTTTGGGTGAGTATGACACGACGAGTGACAAAATGACGCTACTCTCCAAGTCACCACTGCCATCACTGATCTCACATCCTCTTACGAAGCTATCCAACTCCTTGCAAACCGCAGGCGACATCGGTTCAAGGACACCTGTTCCAACCACAAGACTTCCGACCATGTCACTCATAAAATGTGAACAAAACCCCACATCGTCACTGACCCAGACCCCTACGCTGCCGTATGCGCACCACCTATCCCAGAATACCCCAGGGATGTTGCCCCGACCTATCTCGGTGGCATTTGGCGCAGTGCCGCCCCAGATCCTGACTCCTACGCAATTGCAAGTGATCACGGGTCTGATGCCAGGTCAGATGGTACCAATCTCCCACGCGGCTTCAGGTCTCGTCGGCCAATCAGGAGAAATTTCCACAGCTGCTGCTCTCCCCCCGGGTCACATAACAAACTTGATGTTACCAGGGCAACTGGCCGGCCAACCGTTCCCTATGCACGCGGTCACCCTCATGTCCGTGTCAGGTGATTCCTCGCAAGTGTTTTACTCCATGCCAAGTCATTCGCCCGTCGTTTCCGTCGCCATGCCGACGGGCGTGACGTCATCGTCGACCCAGTTTCCGATCAGCAGTCTCTTGCCTGTGGCGGGTACGGCCGGGGCAACCGCTGCGGATTTGTCGACGACGCCTACCGTTCAAATTACCGCCACTGAAAGTAACCTTCAGCGTCAGTCACAACTTTTGCCTCACATTTCCGCAATCCACGGTGCAGGCTCTGCGCAAGCGCATCTGGTGGCAGGTGCGAACGCCTCAGGCTTACCCAATCAGGTTTACAGTCAGATGATACTTCCGGTTGCGTCACCGTTGCACGTTCAGGCCCAGACTCCTCACACGTCTATCGTTCGACCATGCTTGACAACGAAGACGGACGTCTCTCGAATACTTCCAGTGTCACGCGTACAGCTTCCTTCGATATCTCAACTGGGAACGCCCTCGGCTATCAGGAATACCATATCGGCTATCAGGAATCCCATATCGGCTGTTAGTCCCTGCGAGAGAGTCCTCGGCCTCCGGCCTGCAGTCGGCGAAGGGGTTAAGCGCCTTGGGAGTCTTAGCGCCGGGGATACCTTGGTCGTGGAAATGAAACCGGTGGACAATGCAGCGAAAATCGCCGAGTTGGAAGGAAGAGTTGGGAACAAAGTTGGTGGAAGCCATGCCGCTGCAGAAGCCGTGGCCGTGACTTTAGTGCCGGAGACTGGTAACAAGGCAGATGGGAAAAGCTTCAAAGAACCAACTCTTACCTTGAGCGAAGAAGGTGTGGTAGCTCTTGGCAATGGTGAAGGAAGTGGTGGCGAGGTTAATCCTCCTGGTTTGGTACAAACTGTTCCGAACGTGCAGATGGTTGTTGAAAGCAAAGTGTGA

Transcript

Csp0G077470

Protein

Gene family

Family type	Membership / link
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04814 all species →	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR039066 all species →	Family	Hepatocyte nuclear factor 1	Interproscan
IPR023219 all species →	Homologous_superfamily	Hepatocyte nuclear factor 1, N-terminal domain superfamily	Interproscan
IPR006899 all species →	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR044869 all species →	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR044866 all species →	Domain	HNF-1, dimerization domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11568 all species →	HEPATOCYTE NUCLEAR FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001889 all species →	Biological Process	liver development	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030073 all species →	Biological Process	insulin secretion	Interproscan
GO:0031016 all species →	Biological Process	pancreas development	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08036	TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.