Gene detail

Detailed information of Csp0G078240 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00143:3726252...3755360
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G078240

ATGCTAAATACTTTGCCTAATTACACTTGTAACACTATAAAAGATTCAGGCATTATTCTAATTCTTTTTTCTAAGTGCATAACAACATGCCTATTATATTATAAAAAGGTGCATACCCTTTGTAAAATCCTGTTTATGTACTTAGAAATTAATCGGTCATGTTTGAACTTTAATACCGGAAAATGTCGGAACATGCATTGTCGGAACTTACCGAAAAAACTAGTTGCAAGGACAAGACCATATTACACATGTTATTCAGGATGGAAATCTAAATATGGTTACGAATGCACAATACCTATTTGTACCGGTGGTTGTCAAAACGGAGGTTCTTGTACTAATCCAAATACATGCCGCTGCCCAAGTGGTTGGACGGGCTCACGTTGCCGCAGTGATATTGATGAGTGTCGAAGCAGTCGAAACCGTTGTAGCTACAAGCCAGGTTGTAACAACACTCAGGGGAGTTACAGATGTACATGTAGGTCTGGCTACTACCTGGCGTCCGACAGGCGAACATGCAGAGACCACGATGAATGTGTTGCAAATACCGACGGCTGCCAGCACAAATGTGTCAACTTCCCTGGGGGTTACAATTGCACATGTTACCCTGGGAATCGACAACGCAAAACAAATTACAAGTTGTGCGAAGATATTAATGAATGCTTCGAGAGAACTTCGGGATGTGCCCAAATTTGTACCAATCAAATTGCCAGCTTTACATGTTCTTGCAAACAAGGATATTACCTTGGATCTGATTCAAAATCTTGTTATGATGTTGATGAATGTTCCACTGATACCCACAACTGCCAACATAATTGTTCAAACACTTTGGGAAGTTATCACTGCACCTGTAGGGCAGGATTTGATTTGTTGCAAAATGGAAGGAATTGTTTGGGTCGACCGTGTTTCCCAATATATACCCCAGTGAATGGAATTATGGATTGTTCAGGTTATACGACCGAGCATATTTGTCATTTTACGTGTTCGCCTGGGTATGACCTCATTCATTCGAGAAACAGAACTTGCAACTCGTCGAAAGTTTGGACTGGAGAAAATACGAAATGTAAAATTATCCATTGCCCTACTCCTACTGAACCGAACAACGGCTTTGTCTACACTCCATGTGAAACGCAATTCGATTCGCAATGCACTGTGGGATGTTCACGTGGATATTACATCAACGGCACGAATAAGATCACCTGTGACGCAAATGGTGCTTGGCAACCAGGAAATTTAACGTGCAGAGAGATCAAAGTATGTCAACCTAACCCATGTCTCCACGGTGGGATATGCTCTTCGATCAGCTCCGATCATTATTCGTGTGACTGCAGCAACACTGGTTACCAAGGCACTGACTGTGGTGTAGGGTCCATAATTACCCCTGATTTTCCCACCTTGACTGCTGGAGTCCCCTCGCGGCCTCTTACGTTTCAAGCTTCACCTCCCAGTGACTCAATAACTCTTACCCTCTCTGGCCGAGGTTTGGAATTCAATCCTCCTCGACTCGTCTTTCAAAATGGCGGTTCGCGACACCAGTCTCTAACAATAACAGCTCAACGACCTGGTTTACACTTTATTCGATACTCACTGTCCGGTCAGAGTGCAGGAGAATTTCAACCTCCTCAAGCAGACGCCATTTTCGTCAGATCGAAATATTCGACAACAGAACCCCCCAATAACGAAATATTGACCAACGACCTTCCTTCCGGCTGTCACAAACAAGAATTGAACAAATGTCCTGTTACAAACGACGTCATAACCGCTGCGTCGACGTTGCCATGGGTTACATTCGGTCCGCTGACGATGACGAAAGGCGTGGTAAACATCGAGGTTGGCGCGACCAACGTGCCTCTGTCGTTAGTGGGTGCCAATCTCCCCAACGCAAATCAGGTGTCAGCGCCGGAGAACTGCAGCGAGAACGACGGTGGTGACGCAAATGAACAATACATAAAATCACGTATTTTGGTTAGATCGTTTTTAAATGCTGTGAGCGAGAGTCTTCCAAATTGGCTGAGTATTTCCTTGCGGAACAATTCTTCCGCGGGAAATATTTTATTATCGGAACTCACAACGCGTTACCTAACGGGAAAACTTCTACAGGACGCCGATGTCGGAGAAGGACAACTCACACGAGACGATTCGTTTTATTCTCTTCTCCAGTCTCGAAATCTCAACCTCACAATCGATAACGATGTCGACCTGTTGAGGTCAGGTGACCAAAACGTCCCACTCTCATTGGCTGTCGATCTATGTGGTCCGGCTCCAAAAACCGTGATCGTCCGTCCTTCACTAGAAGATATGGACGTGGTGAACGACAATTCAGCGGTGAAAAGTTTAAGGGAAAATGGTTGGAATGTCAAGTTTTACTCTCTGCAGATTTCCAAGAAAAAGCTGATCGAGAAACTTCGAAAAGGTCAGTTTTGGAATGGAGAACGATTCTTCAAGGTTGATGATTCCACCAATGGTAATTTAGCGATGGTATCGTCGTTCAATAAATCCTTCAAGAGCACAAGTTTTATCAAGTCTAGCGTGGAATTTCAAGGAACTATAGTCGCAGACCTTGACAATATCGAAAGTATTTTGGAAACACCTTTAGACCAAGAATGGAAAGTAGATCTCTATGGCAACATTGCAGTGACGACAGAGTTTAAAGTAAAAGGCAAAGTGACGAGGGTGACTGTAGAAGCGCCACAGTCGATTGGTTATGCCAGGTTTGGAGGATGCCAAACTGATGCAAACTATGATCCCCAAGGACTATTTCTCACTACTACACTCCAAGAAGATCCTTTCGTCCATTCAGAGCTGAGCAAGTTCGTTGAACTTGGCTCGAATAAAGCACTCGCTTGTTTCCTTGACACAGCCATACATACAAACAAGGGAAGTCAGTTGTCAAATTATGCTGAAAGGAATGATGGTGTTGGCATGGCCTTCCACGGACATATCAAGTTTGGCCCTTTGCAATTCCAGAACTTAGATATTCAACTATCCATTCGAAACTCGGACTGTTCTAAAGCGACGGATTCGCTGCTTAACACTGCAGGTGTTGTGCTTAATGGTGAGCCCAGTGAAATACGAGGAAGAAAATTCGGAATATTCGAACTCAGTACTGACTTGGCTCTTAAACTTCGTATTCTTGTCGCCATGGACAAAGATTCCAACTCAACGGGTTCATTTCAAAGTATTGCCCAAATCCTCGGCTTTAAGAAGCTAACGAATGTCAGTTTCTCTAACAAAGGTTTGAATTTTGCAGCAAGTGGCAAAGTACATGGTTTATTCGACGCGTCAATGAAGTGTAGCTCAAGCTTGTCTTCGTGGGATGACCAAATATTCACTGTCGCTGGCCAATTTCAAGACAATTCTGTTCGAAGCAGTAACCTAAAGGTTTTCATTGAAGAAAAATTAAACAGATACGCCGTGCAGGTTCTTAAAAAAGCAACAAGCAGATTGGTGGCCGTGAAAGAAACGGAACAGCGGGCGAAAGATCGCCTTGAAAACGTGGTGCTGTTAAAAAAGGCCACGCTGGCAAAGATGCAACGAATTCGCAACGAATACTTGATGGCCGAGCGTGAACTAGCCTCCGCCAGGAAAACTTTGGCTCACTTCGAACAAGCAGCAAAGACGTATTCTGGTGACGTGGATGAATTGAAGGAAGACCTAGATGGTCTTTGTGAAATGAAAGAATGTACGGACGTTTGCCAAGAAGGAGTGGTCTGCACAACCTGTTACCACGATATTATTGGACAGACTATGGGAATGTGCCCTGCGACGTGTCTTAAGACTGAACAGCGACGAATTCCTCCTTACAGCGAAGTCGCTCTTTGCGAGAGGCAGAAATGCACCAGGATTCACAACACGAACGGTCTGTTTAAGTCGCTCTTCGGAAATTTTTTCGGGGGAATACTGAAGGGGGTGCTATCGCTTGGTATAACTGTCGTTGCGAGCTTTTTTGGCGTACCACCGCCTATAGCGTCGGCGCTCGGAAGTGGCCTGGTCACGATCTTGGACACGGGACGAGTTGACGAGGCGCTTTGTTCGATTGGTAAAGGGGTGGTAACGGGTTTCATTGGAGGTCCCAGTGCAACGAAAGTCTTCAAGGAGTTAACAAAGGTAGCCGCCAAAGAAGCAGTAAAGAAAGGTGCGGTTGCAGCAGGAAGACACGGTGCTAGCTTTCTTGTGGGGAAAGTGATATCGTGCCAAAGAGAACAGCGCGATGGATCCTGGAGTTGTCTCGTCGTAGCCGTGCTATGCAGCAAAGGAAGGTTCCAGTACGAGTACGAGCACACTCCGTACGGCTGCAAAAAATCTTGTGTGATAGATAGGATCACCAAGACCATCGAAAAAAGTTGCTGCTCCAACCTGCCGTGTGCTTCTTTCATCGTGAACATCACTTGTGTTGCGGAGAACGCGCTTTGTAAACAGGCGAGGAAGGTCACTTTGGACGAAATTTCAAAAACCAAAGCCAATGCCGCGAATATTCTGAAAAACCTAGCGAGCGCAAGGCAGAATATTTCGTACTGGAAAATCAAAAAACAGAAAGAACACATTAAGCTCGTGTCCGCATCTCGTTCCCTGAATGCATCCCAAGATGCCGTGCGTAGCCTCGAGAGAGCCTATAACGTCACAGTGGAAGCCAGAAGAAGGAAGTTAGACATTTTGGCGAAGCCGCTGAGGTTAAGAGCACTTTTTGATGAGCGCCAGGAATCACTGGTGATGGTTAAGATAGAAGATATCAGATTCGACGTGAGGGCATCGGCAAGACGTGAGAGTACCTTGCTACCCATCTACATCACATTTATGGCAAACGGAAGTCGAGAGACGTTGTCAACAGTTCTTGATTTTAAAAGATTGAATGCTTCTTTGAGAAGTATCGCAAAGGAAATCCTTAGCACGTCCGTTGGAGATCTGTCCAGTGTTTCACGAAAGAGGCGTTCAGTGGAGGGCCCACGAGATTCAATCGGCTCCGATCAGAGGTTTTTGGAATTGAAAATTTACCACAAGCTTTGTGCAGAGTTTACAAATTACGAACAAACCCTGTACGAGGTGGTGAGCTCGTTGCAAAACTTATCCTCTGAAGCCCGTAGTCTTCAGCAAAACCTAAAAAACAGAAATGAGTCATCATCGTTCAACATCAGTGATGTTTTAACGAAGTTTAGTGTCAACGAGACGCTAGCCTTAAAATTGGGAGTTAATGTGCCAAAAAATGTCTCCCTTTTACTCGATCACCTCAACACAGATCCTGAATTGTCTGAAGCAAATGACCTTGCACAGGAGGCAACCAAAGATGGCCGCGAACCACTCCACCTTGCAGCGAAGCTACTGGTGTACAACTGGTACGCGATTATGGAGGATATTTTCAACGAATCTTCGATAGCGAATGAGTGTAGCGGCTTGGAGGATTGCTTGAAATATACAATCGACAATTTATACGAGATTTACGCAGAGATCGAGCTGCCAAGAGCTCCACGCGTTCGCGAACACATCAAAGCCATCGAGACGAAGCTGGCTGAGCTGACACAAAGTGTTGGAATGTCGGTCGACGACGCTGTCGAGATATCATCGGAAATTCTGACAATCCTCGAAGACATGGCGAACGTGAACGACGTGTGCGCGAACCCACCGAATATTACGAAACATCCCGAGGTCTTCACGGAGATGGGTGTCGGCAACACGCTTTCCCTGACGTGCAACGCCACCGGAAGTGCTTTGGTTTACAAATGGAGATTCAATGGGGAATTTTTGCAAGATCAATTGACTAACAATTTGTTGATTAAAAACACAACTGTATCCCACAGCGGTGACTATACCTGCGAAGTATCAAACCATATAGCTACGGACACATCGATACCTTCCCGGGTAATCGTCTATCGTCCACCTTCGATCATTGTCCAACCAGAGGTCCTTCTTAGTGTTGCTTTGTCAAGCGATGCCTCCCTCGAATGTCTGGCTGAAAGCAGTCATAGGAATATTACGTACCAATGGTGGTTCAAATCCGTCAACGCAACATATTTTCTTGCTCTCAAAAACGAGACATTTTCTTACCTTAACTTCGCCCCAATGACACCCACTTATGAAGGCTGGTATTTCTGCAACGTCTCGAACGCGTACGGTTATAGCATTTCAAGAACAAGCTTCGTCAAGGCGTTGTACTTCAGTCTGCCCGTTCCAGTTGCAACCCTCTCGTTGTCCGTCACACGAATGGTACAGGAAAACGAAACCGCTGTAAAGAAATTGAACGCAAGTTCTTATCGAGATATTCGTTCCCGCATTTCAGAATTGCTTTCGTCATTTGGAAACCTCAGTACTGCTACACCGACCATAAGAAACTTGCATCCGGTTACCTGCGAACTGAGGAATTCGCGCAGCAACAAAACACGTGACAACGTCGAGGTCTGTCAATGGCAATTCCAGTACGTGGGGGAAAACACGACCTCAAACTCCAGTGTGAATGATGGGTTCGAAGTAAACGCCAGAAAGGTTCTCAACGCAAGTCTAGACGTGAAACAGGACGTCGAAGAGCTTGTTAATGCAACCAATAATGGTTCTTTGTCGTTCTTGCTGGATAACCAGACGTACTTTGTCGAGAAACATTCACTGAGTGTTCAAGCTTTCTTCTTGCTTTGCCCGCAAAGGCAAACTCTAGTTCAAAAAGACTTCAATTGCGTTGACTGCCCACCGGGATCTTACGGTAAACTAGATGATAATGGAATAGCATCGTGTCAACACTGTCCTTTGGGATCATATCAAACTAACTCGGGCCAGGCATCGTGTGTAAAATGCCCGAAAGGATTTACTACCGTATACCTAGGAACATATGACAAGGCTGAATGCAAAGGTGATGATTTAATTGAAATTTATATTATTTATTTGACTCCGAATCTGGAGTTGTTATGTCCGCCATTAATCGTTCATGTTCCTGACCAGCGAAACGAAGTGACGTCAGATTCTCAATGCGAAGACTCTACATGGCTAATTCTTCAAGTAAATCAAGTACAATTATTGAACACACAACTCGACATGTTCGTGTTAACATTTGATACCCTCTCACCTTCACTCGCACGCATCGGGAAATTACTCAACATTTCGTCGGGAACGTCAAATCTAAAATCAGCCAAACTGAAATCCCCTCTCAATGCAACCTTCCTGATGTGCTCTAGAGACGTGGCAAAACCTGCTATACGTCCAGCAACAGGTCCCCTGCAGGAGATGCCGGGTGCTGTTATCGAAACAACCTTTCGCGCCTACCCACAAGGCAGCGGGGACCAAGCGCGTTGTTCCGAATTTTCAGGGATGGGCCCCGATCAAGCAATCCCCTACTTTCCGATAAACCGGTTGGTCTATGCAAGGCAGGGACGACCTTACCCCTGA

Transcript

Csp0G078240

Protein

Csp0G078240

MLNTLPNYTCNTIKDSGIILILFSKCITTCLLYYKKVHTLCKILFMYLEINRSCLNFNTGKCRNMHCRNLPKKLVARTRPYYTCYSGWKSKYGYECTIPICTGGCQNGGSCTNPNTCRCPSGWTGSRCRSDIDECRSSRNRCSYKPGCNNTQGSYRCTCRSGYYLASDRRTCRDHDECVANTDGCQHKCVNFPGGYNCTCYPGNRQRKTNYKLCEDINECFERTSGCAQICTNQIASFTCSCKQGYYLGSDSKSCYDVDECSTDTHNCQHNCSNTLGSYHCTCRAGFDLLQNGRNCLGRPCFPIYTPVNGIMDCSGYTTEHICHFTCSPGYDLIHSRNRTCNSSKVWTGENTKCKIIHCPTPTEPNNGFVYTPCETQFDSQCTVGCSRGYYINGTNKITCDANGAWQPGNLTCREIKVCQPNPCLHGGICSSISSDHYSCDCSNTGYQGTDCGVGSIITPDFPTLTAGVPSRPLTFQASPPSDSITLTLSGRGLEFNPPRLVFQNGGSRHQSLTITAQRPGLHFIRYSLSGQSAGEFQPPQADAIFVRSKYSTTEPPNNEILTNDLPSGCHKQELNKCPVTNDVITAASTLPWVTFGPLTMTKGVVNIEVGATNVPLSLVGANLPNANQVSAPENCSENDGGDANEQYIKSRILVRSFLNAVSESLPNWLSISLRNNSSAGNILLSELTTRYLTGKLLQDADVGEGQLTRDDSFYSLLQSRNLNLTIDNDVDLLRSGDQNVPLSLAVDLCGPAPKTVIVRPSLEDMDVVNDNSAVKSLRENGWNVKFYSLQISKKKLIEKLRKGQFWNGERFFKVDDSTNGNLAMVSSFNKSFKSTSFIKSSVEFQGTIVADLDNIESILETPLDQEWKVDLYGNIAVTTEFKVKGKVTRVTVEAPQSIGYARFGGCQTDANYDPQGLFLTTTLQEDPFVHSELSKFVELGSNKALACFLDTAIHTNKGSQLSNYAERNDGVGMAFHGHIKFGPLQFQNLDIQLSIRNSDCSKATDSLLNTAGVVLNGEPSEIRGRKFGIFELSTDLALKLRILVAMDKDSNSTGSFQSIAQILGFKKLTNVSFSNKGLNFAASGKVHGLFDASMKCSSSLSSWDDQIFTVAGQFQDNSVRSSNLKVFIEEKLNRYAVQVLKKATSRLVAVKETEQRAKDRLENVVLLKKATLAKMQRIRNEYLMAERELASARKTLAHFEQAAKTYSGDVDELKEDLDGLCEMKECTDVCQEGVVCTTCYHDIIGQTMGMCPATCLKTEQRRIPPYSEVALCERQKCTRIHNTNGLFKSLFGNFFGGILKGVLSLGITVVASFFGVPPPIASALGSGLVTILDTGRVDEALCSIGKGVVTGFIGGPSATKVFKELTKVAAKEAVKKGAVAAGRHGASFLVGKVISCQREQRDGSWSCLVVAVLCSKGRFQYEYEHTPYGCKKSCVIDRITKTIEKSCCSNLPCASFIVNITCVAENALCKQARKVTLDEISKTKANAANILKNLASARQNISYWKIKKQKEHIKLVSASRSLNASQDAVRSLERAYNVTVEARRRKLDILAKPLRLRALFDERQESLVMVKIEDIRFDVRASARRESTLLPIYITFMANGSRETLSTVLDFKRLNASLRSIAKEILSTSVGDLSSVSRKRRSVEGPRDSIGSDQRFLELKIYHKLCAEFTNYEQTLYEVVSSLQNLSSEARSLQQNLKNRNESSSFNISDVLTKFSVNETLALKLGVNVPKNVSLLLDHLNTDPELSEANDLAQEATKDGREPLHLAAKLLVYNWYAIMEDIFNESSIANECSGLEDCLKYTIDNLYEIYAEIELPRAPRVREHIKAIETKLAELTQSVGMSVDDAVEISSEILTILEDMANVNDVCANPPNITKHPEVFTEMGVGNTLSLTCNATGSALVYKWRFNGEFLQDQLTNNLLIKNTTVSHSGDYTCEVSNHIATDTSIPSRVIVYRPPSIIVQPEVLLSVALSSDASLECLAESSHRNITYQWWFKSVNATYFLALKNETFSYLNFAPMTPTYEGWYFCNVSNAYGYSISRTSFVKALYFSLPVPVATLSLSVTRMVQENETAVKKLNASSYRDIRSRISELLSSFGNLSTATPTIRNLHPVTCELRNSRSNKTRDNVEVCQWQFQYVGENTTSNSSVNDGFEVNARKVLNASLDVKQDVEELVNATNNGSLSFLLDNQTYFVEKHSLSVQAFFLLCPQRQTLVQKDFNCVDCPPGSYGKLDDNGIASCQHCPLGSYQTNSGQASCVKCPKGFTTVYLGTYDKAECKGDDLIEIYIIYLTPNLELLCPPLIVHVPDQRNEVTSDSQCEDSTWLILQVNQVQLLNTQLDMFVLTFDTLSPSLARIGKLLNISSGTSNLKSAKLKSPLNATFLMCSRDVAKPAIRPATGPLQEMPGAVIETTFRAYPQGSGDQARCSEFSGMGPDQAIPYFPINRLVYARQGRPYP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR052080 all species →	Family	von Willebrand factor C/EGF & Fibrillin	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47333 all species →	VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06825	FBN1; fibrillin 1	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.