Gene detail

Detailed information of Csp0G078440 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00143:4109562...4134944
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G078440

ATGGCGGACGGTGAGGGAAAGGTTTTTTCAACAGAAGGACAAGAAAACGAAGGCTGCGAGGTTCCCCTTGATAGTGAAACTCCAGAGAGTGTAAAAGATGAAGAAATGGACGAGGATTCAAGTAGTTCAAGTGATTCTAGCGACGAAGAAGAAATGGAGAGTGCAGAAATAACAGCTCTTCGACAGCATTTGGAGAGCTCTCCTTTTCACTATGACACACATTTGGAGCTGGTGAAAGCACTTCGGGAACAAGGAGATTTGGAGAAAGCCAGACAAGCTAGGGAGATGATGAGCAAGCTGTTTCCACTTACTGCAGAATTATGGTTGGAGTGGATAAATGATGAAATGCCACTGTCTTGTATTACTGAACAGAAAACGTACATCAAAGAACTGTTTGAGAAAGCTATTAAAGACTATCAATCTGTCAAATTGTGGACTGAATACTGTCAATATGTTATGGATAACATGGAGGGCCAAGAAGGAATTGTTGATGCACGTGCTGTTTTTGAGAAAGCCATTACTTCTGTTGGTCTTCATCTTACTGAGGGTGTTTCAATTTGGGATGGGTACAGAGAATTTGAGATGGCATTGTATGATTCCTATCAGGTATTACGAAGACGAACTTTTCTGCGCAGTGGAGAAACAACAATGGAAAAGAACCATGCGCAATGGCAGCAACAAAAGGAAAAAGTCAAAGCTATTTTTAGAAGAGAAGTTTCTGTTCCTCTGATTGGTATGCAAGCTGTCTATAGAGAATTCGAGGAATGGTTGGGCGACGAGGATGTACCACAGTCTGTTACACAAGCTTTCAAAAAAGCTGAAGCCAAGTTAGAAGACTGTCTGTCTTATGAAGAGGCTTTGATGTCAGCTGGCGAGCCCAAATTGGACGAGTATCGTTCTTATATTGCCTATGAAGTAAAAGGAGATGATCCGGCAAGAGTACAGTGTGTCTATGAGAGAGCTGTAGTGGAGAACTGTCTTAATTCCGAACTATGGTTTGAATACACAAACTACATGGATACAAAACTCAACATTTCTGATATCAGCTTGCCTGTTCATGAGCGCGCAGTTCGCAATTGTCCTTGGCTTGTGACTTTGTGGCAGAACTATCTAAAAGTTATGGAACGTACAGGACAAACTCACGAGAAAACCAAAGAAATATTCGAGCGAGCTCTATCAACGGGTGTCTCGAATGGTCAAGATTGTGATAGTCTGTGGTGTAGTTTTCTAGAATATTTGAGAAGGAGAGTGGGAGACTGGACACAAGAAAGTAAGGAAAAGGAAGATCTGAAAGACGGATTTAAAAATGCCGTAGAATATACAGAACAACACTTTGGTAAGAATTCTGAGTCCCAATCACCCATATTAAGATTCAGAGCTTATATCGAGGCGACGAAAATGAACAATTTGTCTGAAGCTAAGAAAATCTGGGATACCATCATGACCTCCCACAATCGCGAAGCAGAATATTGGTTGGAATATATTCGTCTGTTAAGGCGATTTGACGACACGACGGGATGCCGTAAGTTGTTCCAGAAAGCGATTCAAATTAGCAGTGACAACCCCAAACTGCTGTGCGAAGCATTTGAAAAGTTTGAAAGAGAAGAAGGTTCATTGGCTGATCTCGACAGCGCAGTAGCTCGGTGTAGTACTCAACTAAAAAGAGTGTGGGAACGAAAGACTAAGGAACACGAGAAAGAGGAGTCTCGTAAGAAAGCCGAGGAAGAATCAACGACGAAACGAACTCAGCAAAAGGCGGAAAAACGTTCTCAGAAGAAAGTCGAAATGAAAGCAAAATCGCAAACAACGAAAAGAAAACATCAAGATTCTGAAGAGGTTACGAGAGGCAAGGAGAGAATTGAACCGCCACCGAAGAAGCCATACGTTTCAAAAGAAAGTTCAACAACATCCAACGTGGAGGCAAGAGAAACATCGAGCAAAGAGACTGCTCTCGACAGCCTTCGTGAAGGGGCGAACTACTCTCAAACTGTGTTCGCAAGCAACCTTCTCTTCTCGGTCGATGAAGAACAACTGAAAAATACTTTCTCACCTCTAGGAGAGATCACAGAAATCCGGTTGGTAAAAAATCGGATGGGAAAATCCAAGGGATACGCTTATGTCGAGTTCAAAAATGAGAGCTCAGTTGTGGCTGCTTTAGCCATGGATCGTCAAGAGTTGTGTGGAAGACCTATGTTTGTCTCACCATGTGTGGATAAAAGCCAGCACCCAACCACTTTCAGGTTTCCAACGTCGTTAGATAAGTGTACAGTGTTTGTTACCAACTTGCCTTTCGAGATGACGTCGACGGAAATCGAGGAGATTTTCAAAGTGCACGGTAATATCAAACAAGTTCGTCTCGTTACCAATCGTGCTGGAAAGTCCAAGGGTTATGCTTATGTTGAGTATGAAGAAGAGACCGCAGCATCTGTAGCAGTTCTCAAGTCAGACCAGACAACTATCGGTGAACGGCAGATCTTCGTAGCACTGTCGAACCCTCCGAAGAAGCACCGACGAGAGAACGAAACAGAAACCAATAAACAAGTGGGGAGTCGACCTGGCCGAGCTCGGACTCAGTTACAACTCGTGCCCAGGGCCCTTCAGAAGTCATCGGCGCCCGGTGACTACTCGAAAGGATCGAGCGAAGAAACAGCCAAACTTAAATCTAAAATGAGCAACGATGATTTCAGAAAGATGTTCCAGTAG

Transcript

Csp0G078440

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843 all species →	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR034217 all species →	Domain	SART3, RNA recognition motif 1	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR008847 all species →	Domain	Suppressor of forked	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17204 all species →	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22611	SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.