Gene detail

Detailed information of Csp0G080790 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00146:330060...350024
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G080790

ATGGACTTTTTTGCTGTTAAAGTTATTGGATGTGATGTCAAGAGGCATTTTTTGTGGCAAGTAACAAAAGAAAACTGGTTTGGAATGGCTCTTGTGACATCACATCGGAATGTATCTTTCTCACTGATGGTATCTGCTATCCCGCCAGTTGATACAGTCACAATGGCTGTTAATGACCCGCGAGTATTGTTGGATGCTATGGGCACAATGCTTGGCGAGAGTGGAGACATCAAAGGACCACACGAAGTTGATACTGTGATAAGCCTTATGAAAGACTCTGAAAAGCTTCTAAGTCGTTACACCTTTTTGAATATACTACGAGCCACTGTTGAACTAGCTGCTGAAAATACGATTGCCTTGGAAACTGTTAATCAATTTGTAAAAGACGGTGGTTGTACAATTTTGAACAAATGGCTGACTGATGCAAAGGTTTGGGATAATCTGCCATTAATGTTGGAAGTTTTAGAGATTTTAGAAGCAATGCCTGTTACTATTGAAGCTCTTAAACAGGGCAATATTGGCAAACTAGTAAAGCAACTAACAAGAAGTGAAGAAAAAGATATACGAGAGCTAGCTAGCAGTTTACTAAACAAGTGGATGGTGCTTGTGAAAGGAAAACCTAAAAAGAGTAAAAAATCAGATCAGCGGACTGAAGAATCAAACTCTGCCAGTAGTCCAACAGGAAAGAGAGCAAGAGAAAATGTAGCTGTTGGTAGTAAATCTAACCAACCACCAGAAAAGAAAAGCAAGTCTCTGGCAGAAGCCAAAAGTAGTGTAACAAGTGTTGCAAAGCCACCACCGAAGACGAAGGTTATCCCTGCATTGCCAAAACTTATAGTGATGGAGAGTTCGGGATTCATGAATGCCTTGATTACGACACCTTCACCAGCTGTGAAAAAGAAGAAAAAGGTCGCAACTCCACCATCGCCAAAACTAGCCTATTCCGGTCCTCTGGAGGAAATATTACAAAAACAAATCCAGACCCACATGCAGGGAGAGGAAATGGGAAGCAAACAGAAAGAGAAACCAGAGGGAGAAGAAGAAGAACAAGAGAAAGATGCTGGAAATAATGATCTCCAAGAAAGTAGCCAAGAGGGTGACACACTGGACAAGAGTACAGCAGAAGAACCAACTGTCGTGGAGCAATCAAATGCTAATCTCCCCGAACCTGATACTGAACTGGTTAGCACTGCAAGTTCGAGTGAGCTCCCAGTTACTGAAGTAGAAGAGAAACCAAACAAGACAGAGGCGGAGCCTAGTGTTGTTGAAGTAACGAATGAAGTTGAAGATGTCGAGAAGAAGAAGAAGAAAAAGAAGACGAAAAATATCTCGTGGGCTGAGGATGACAAACTTTTAGTTTATCATTATTATGAACCAGATGAAGAGGAAAGAGTAAACGTCCAGCACGTTGTCAGCTTCCACGATGCTCAACAACAAGAAACCATAAGAGAGAGACAAAGAGTGGAGCAAGCAAAGCGACTGAGCGAAGATAAGATGATGGAGAAGCTTTTATGGTATAGACCAAAGCCTTTTCAAGTATCAGAGCTGATGGAACATGGCGAAAAAAGCGAAGAGAAATTCCATCAGAAAGATCGCGAGTCCAAGATTTTGGCACATTTGTTTTTCACAAAATCAAGTTTGCCGACTACTCCTGGCGAGCCAGAGCCTGATGCAAACGCTGGCTCGACGTCTACACAACCTTTAGTTATACCACATGACGAGAGAGGCACAGTATATCCACCATCCAAAGGTACCGCTCTCTCCCAGCCTCCTATCGAAGTAACCCTGCCTGCTGCTGACCCCGGCGTTGCGTTACCCCCCGCCTTGGCTACGTTGCTGGCAAATGCAAGCAAAGGTGGTGGAAATAGCCCGTCATTATCAAACGTTGATGTACAAGCACTTCTAAAAAAACTCATGGGATCTCAGGAGCTCGGTGAAGGAGGGACACTAGAGGACGCAGCGGAACGCATGAGAAACGAGCTCAATAGTTCGCGGTTCCCTTCTCCACTGATGAGTCAACAACTTCGTGTACCAGGCAGGGTACCTGCAGATCAAGGACCACATGGCGGCGGTCAGTTCGATCCTCGCGGTCCACCGGAGTATAGACCTCGCGGGTTATTACGCACCCCGGGCCCGCCTGACCATCCACGGTTTCCGGGGCCACATCGTGGTGGACCCCCTCGTGGACGATTTCATCCCCAGGGTGGACCGCGATTTCGACATCCGATGCCTGGGCAAAGAATGCCGGGAATGGGGAGTGGGGGAATGCCAAATAGGTATCCAGGCCCCGACGGTAATCGGGATTCTGGCGATGAATTTTACAACGATCAATACAACTTCACCGACGGGGAAAGCCCGGAAGGAATGGGGCGTGGCATGCCGCCACGTGGCGGCCGAGGAGCACGTGGTCGAGGGCGTGGTCGAGCGACGTGTCGTCATTACATGTCACCGCGAGGTTGCCTACGGGGAAACCAATGTACATTCCTTCATCCGGGCATCAACAGACCGCCAGTTTGA

Transcript

Csp0G080790

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08711 all species →	Med26	TFIIS helical bundle-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017923 all species →	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR003617 all species →	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46557 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0008157 all species →	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:0072357 all species →	Cellular Component	PTW/PP1 phosphatase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17552	PPP1R10; protein phosphatase 1 regulatory subunit 10	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.