Gene detail

Detailed information of Csp0G085230 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00148:164683...190657
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G085230

ATGCCTAAGTTTTCTTTCGTTGAGGCCGAAACAAACCAGAAGTTAGTTAACCTTGGCTCGAAAACATGGGGTGGACAAACCTACAGCGATGTCTTCACGGGTGAAACGTTAGTTAATGTGTTATTCAAGGACCCAGCGAAATATCCGAGCCGAGAAACCGCTGTTCAGCATGCTCAAGAACTGTTAGACACCCTCGCCATTACTTGCGTTACAAAAAGACGAACATTTGACGATGGAGAAAGATTGTACTGCATCAATCGGAAAAAGACGGAAAACGATGACAGTACGACGACGACCGCGAAAACGACGAAGAGGAGCCCGAACGCTAAGGTAGCGACAGAAGGGAAAGAGGCAGCTTTGAAACCAACCAATCATGAGAATGTGAACGCTGCAAGCGACAAGACGACCAGTTTCGTCAGCGAATCGCGTTTGAGTTGCGAGTCGAGTGCTTCGAAAACATCCTCGAATCTCTTTCGGTTGCTGGAGAAGGATGCAGCAGAAAGTGTGAGAACGGGACAGGGTTCAGGTGTCAGTGTGAATGTGGAATTAAAAGATAAACAATCTAAAGCTCGTAAAGACGAGATGTTGGCGGCAAAGAAGATGAACTCGGGTTTGAGTAAGCCGAGCTGCGATGAAAAGACACGGGGATTAATTACTTCAGAGAAAGGAGCTTTGGGTCTTCCCGGAGTGAAGCCTACCCGCCGGACTACTGATGAGTCTTTAACGATATCGCTTTCCGACAGCAATACGGGAGACGTCCACCGTAGTTGTTTGTTGGAGAAAGAAACGTTGAACATCGGGAAACATCTGGACTGCCGCGACACAGGCGATGCATCGGGGGGTAAACAAAAACTAGGCAAGACTTTGTCGCCCGCTTTGACAGCTCTGCTCGAAAAGGACGCCAAAGGAAGAACGGCTAGCAAGGAGGGAGAGATACAAGAGCTAGGCAAAAGCGACAATGAACTATCAAGAAGCTGGGATACGTTTGAGGTGAAACTGCAGAAAAAAGTTAAGAACCAAGGTCGTACACCTGGCGGAGCGGTGCGTAGCAACGCGTTATCCGTGACTAAGAATGAAGAAAATGGAAGAATAGCGTTTGGAAGAAGTAACACCGGAACCGACGAGGAAGAAAAGGATGGGTTGGAACGACCACCTTCGTCGTCGTCATTAGAGAAATACGAGTTCGTAGTTAAGGAGGAACCGGGGAAATTCATGGCTGTTACCTGCAACGACGAGCTGTTGATGGTTTCCGTAAAGGAAAGAAAGAATTCGTTCCTTGGTCTGGAGGAATCCGGAAAAGAGAAAGAAGACGGCGCCGAGAGAAAATCAACTTTGGGAAAAGTCGGCACAGGATCGCCAGAAAGAGTTCCATCGTTCAGCTTGAGAGAAGATGCTAAGGCTGTAATTATCGAGGAAGGTGTGCAGGCGGAGGAGTATCCACGTTCCAATAATGAGATATCTAAAAGAGACTCGGGTGATCGACGAAGGGTTCCTTCGTTTGATTTGCGAGGGGATTCGAAAACTGTAATCGTCGATGGTGCTTTACAAGACAGTAGTAATGACAAGACATCTGGTTTGTCGAGCGCACAAGACCTTGTGCGAGCTGGCGGGCACGCGATACCCAAAACACTCGCTGCCCTGTTGGCCAAGGATGGTAGCTCTGCAAGAGAATGGGAGCAGGGATCTGACGAGACGAACGTTTTTAGGAACAAGCTGAAAGAACTCAAAAAGACATCACCGGGCATCAGCCCCGGGACCAAAGCTCGAACTTCGACGGAATCACCAGGGGGGGAATCCACGTCGGATAAAGTGGACGGAAAGAGAGACAATGTTTTAGATAAAACAGATCATTCGAAGAATAATGACATAGATGAAACATCTGTCAATGATACCGTGGGGAAAGTGCCCTTGCCTGTGTTTAAAACCACCAGTGTAGAAAACAATGTTGCGTCGACTGTTAAAGCTACTAAGAAGAGCAAGGGGACTGAAGTCCAGGAATTAAGTCCAGGTATTAAAACGAATCACAACTCGACCGTGGGTTACGTCATTCCCCATCAAAATCTCACCCCAAACGGTGGTGCGGCCATTCGAACTCGGCCCAATTCCTTTGCCATCTCTCCCACTTTAATATTATCCTCTCCCTTATCGCCTGACTCAGCTCCAGGTCTACAGAGCGAAAAGGAACTACAGAAGAGCAGAGAAGATTTCGAAGAAAGCAAGCTTACATACGAAAGTAGGATCACAGAACTTCAGCTTCAAATCGATTTTCTTCGTCGGCAAAAGAATGGACAGTTGAACGATGAGAACTGTTTAAACAGCTCAGCCTCGATGTCAGAACTGACGTCATTGTACTCCTCGTTTTCAACACCAGTAGCGTCCCCTGATCACTCAAATATGACGTCACCAGCGCTAACACCGTGCGACACTCCCAGAGGGTCCATCGCGGACGACAGCGTCCCCTTCTCACCCGTTTCCCCACCGCCACCACCGCCTCCCGCTCCGCCGTCAGTTCCCTCTGGCCCCATCGTAAATGGAGGTGGGGTGAAACCGACCAAGTTAGCGGTGAAACCGCGGGCTGACATGAAGCCGTTGTTTTGGAATAGGATCATTACTTCCGGTGATTCTAGCAGAAAGGGAAAGTGTGTATGGAAAACTATTAAAGAACCAGTCATCGATACAACTGAATTTGAGAGGCTGTTCAGCAAGAAAATTGACAGTCGGAAAGTTAAGAGAACCAAGTCACTGCGAGACGACAAGCATTTTGCTCATATTCGTGGAAAGAAGATTGCTAAATTGCTTGAAACGAACAGAGCTCGCGCCATTGGTATTAAAATGAGCAGCCTTCATTGTGAACTGGATGATATTAGAAATGCCGTGTACAACATGGACACAAGTGCTGTCGACATGGAAAGCCTTCAGTTTATCTACGACATCTACCCTACAGAAGAGGAGATTGGGTTAATTCAGGATCATGTCAAGAAGCTACCAGCAGTGCCTCTGGATAAACCCGAGGAATTCATGCATCAGCTTGCAAAGATGAAACATTTCAAGGAACGCTTGGAATGTTGGTTGTTCCAAGAAACATTCTCGGAAGTTATATGTGGTATAGATCGAAGTTTGGCTTGTGTTACTGAAAGTTGTTCTATCATATCCGCGAATCCAGAGATTTCTGCTATTCTATCCCTCATCCTGGCGTATGGAAACTACATGAATGGTAATACGGTGCGAGGTCAGGCTGATGGATTCCATTTGGATGTCCTGCTTAAGCTGCGAGATGTCAAGAATAAGGAATCCGATATGAATTTACTGCAGTATATTGTGAAGCAATATTTAAAACAACACGAGCGAAGCACGGAGAAAGGAAAGAGTGAGATCAGATTACCAAGTTCAGTCTCGCTATTTAACGCCGCCCAGGTTTCATTTCACAAACTGCGAGAAGAACTTATCAAAGTGTCGTCTTTACTTCAAGAAACGGAAGTGCAGACTAAGAAAATCCTTGACGAATGTTCACCATCTAAAAGGAATCCTTTCGAGGATAAAATGCGTCATTTCCAGAAAATGGCTACAGAAAATATATCAGAGGAAAACGGAAAAATGGAAAAAGCTGTTGAGACATTTCAGGAAACGATGGAATATTTCCAGTGGCAACCAAACGGACAAACGGAAACGCCGCAAGAGTTTTTTGCCTTGTGGGCGAAATTCATCGAGGACGTCAAAAACTGCGTGAAGTTGGAAAAACAGCAGCATCATCAAGCAAAGAAAAACATCAGCAAAGTCGAACATCTGGACCAAATCCAAGCGGCTGCAACGAAATTCAAAAAACGTCGCGAAAGTGTTGACTTCTTGTGA

Transcript

Csp0G085230

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002391 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR001265 all species →	Family	Formin homology family, Cappuccino subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0045010 all species →	Biological Process	actin nucleation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G085230.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.