Gene detail

Detailed information of Csp0G090150 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00152:955294...962580
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G090150

ATGGAGCAAAATAACAGTATTTTCTACTCCCTACGCAATCGTTTATGTGGTTTGAGAGAGCGAAGTGGATTACGCAGAAATGTCCTTGGCAGTACATATTTGGTTAAACGACTAAAATGTGAAAATGTTTTTGTCGGTCATGAAGGATGTGTTAACACTGTGGCATGGAATGAAACTGGCGATATCCTTCTTTCTGGTTCAGATGACTGCAAACTGAATATATATAGATTAACGTCGATGAAGCCAGTTCATTCTATAACAAGTGGTCATCGTGCAAACATATTCAGTGCGAAATTTCTACCTGGAACAGGCGACACAAAGGTGGTGTCTTGTTCGGGCGATGGTATACTTCACTACAACGATGTTAACAGTCATTCCTTTTGTGGACAGAGTCCGTTTCATTGCCATACTGGTACAACTTACGAGGTCAATACAATTCCAAGGGATCCACATAGTTTTCTTTCTTCTGGTGAAGATGGGACAGTACGACTGTTTGATCTTCGAAGTAAAACAAAGTGTTTGTGTGAAGGATGTAAAGAGGATGTTCTCATTGACTGCGAGAAAGCTGTGACATCGTTTAGCATGAACCCTGTGTATCCGTACTACATCGCTGTTGGTTGTGAAAACAGCATGTTATGTATCTACGATCGACGCTTTCTCGCCACTGATCGACAAAGCAACAACAAACTACATGGCTTGGTCCATCGATATAAACCTAAAGCGCTGGAAAGACGAGATTGCAGAGTAACGTCTCTTAAATACAGTTCTGATGGCCAAAGTCTGCTCGCAAGCTTCTGTTCAGATTACATTTACATTTTCGACTCAAATCCAAACTCATCAAAGCAAACTCGACCAAACAACACCACAGATCATGAACGAACTGACGGCGCGCAAGGCACTAACGACCCACCCATGAAACGGTTACGTCTTCGTGGGGACTGGTCCGATACGGGTCCTAATGCCCGACCGGAGTGCGAAGAACAGGAGAACAGTGAGAACACTTTTGTACAGCGCATGTCTGGATATTTGACAAGATGGATCGAGGAGTCGCTACAGAATACACAGCGGCAACGACGACATAATCCGACGACTCCACGAGTACGTCCTGAAGAAGCTCAAGAACGGAGCATTCCTGGCGACGAAAATCCTGACCCGACACTGGAAAGTGCCGTGATGCATGACGGGAACGACGAGATTGATGCCGTCGCACACGAAACCTGTTATTTAACTAATTCAAGTCAACGTGAAGCGGGGACACCAAAGGAATCGAGAGATGGTGAACAAGATGTAGAACAATCATGCAGTTCGGGTGTGGCATATAAAATTGACGGGCAAGATGATGATACATCTGGCGAATGTTCAACTTCTACGTCAGCGAGCATCGACGATAATACGAACAATTCCGAATCCTCAACGAAGCCATCACAGGCTCACATCGACTGCGTGTGTAGCTCAGTGGTCGAGAGCGATAGTATTCAAACTCGTGATACCGGAAATAAGTCCACTGGCGAGACCACGTCTTCGTCGTCAGCGACGTCTATTATTGGCCGTGAAAACGAGTATCGCCAAGGGACAGATGGAGCACTTGGGGGTAATGCAGATCAGCAGTTGAACAGTGGAACACATGCAGAAACAATAGGTGAATTAAGGTTAACAACGGAGGTTGGGTTCACGAATCCAGAAATTGAAGCAGCAGTATCGGATGCTACGCCCCGGGTATGTGTATCCTGTGGAAGTCAAGATGGGGCGGCACAGGAATCGGAAACAGACGTTGATTCGTCGAGAACTAAACGCCAAAGTAGTAGTAATCCGAGGTCTCGAGAAGTCAGTGTCGGAGATTCCAAAGAGTCGGAAGATGCCGATCGTGAGACGAAGAGAAACCTAGCAGCTAGTACCATTCAGAACTTTTTCCGTTATCGTCAGAAAAATAATTGGGCAAGCCAGTGTGGTGTTCCGATGTTTTCCGAAGCAAAGCAGATATTCCGAGGTCACAGAAATGCCCGCACAATGATCAAGGAAGCCAACTTTTGGGGTGATGATTTCATCTTGAGTGGAAGCGATTGTGGTCGTATTTTCATCTGGTCAAAAGACACAGCAGAGTTGGTAATGTTACTCGAAGGAGATCGCCATGTTGTCAATTGTGTTCAGCCACATCCTTATGATCCAATTTTGGCTACGAGTGGTATCGATTACGATGTAAAACTATGGACTCCGACCGCTTTGGACGTTAGCGACATGGAGAAAGCAAACGAGGTCATTGCTTGTAACGAGAAAATGTTGAAAGAAAGTCGAGATACGTTGACTGTCCCTGCTTCGTTTATGATAAGAGTGCTCTCATCACTACATCGTGTTCGAGTTAATACGACGGGTAACGATGAATCGTCGGGAGATTCCGACAGTGATTGGGAGGAAAATGACTGA

Transcript

Csp0G090150

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR045151 all species →	Family	DDB1- and CUL4-associated factor 8-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15574 all species →	WD REPEAT DOMAIN-CONTAINING FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030374 all species →	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11795	DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.