Gene detail

Detailed information of Csp0G101900 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00170:1966605...1982546
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G101900

ATGCATAGCTTTAGTTTCAATCTTTTCCGAAATATCCATGGGCCCTTTTCGAGTTCACTAGTCATGAAAAAGCATGGTGCAGAATTCTTTGCTGTTGCACCTGGGGTGCAGATACCTTATGTTGGGCAAGATGATTCAATCAACATCACTGCTAAAAGTCTGATGCAATCTCTCCCACAATCTTGTACAAACACTTCTGTTCCTTGCAAAGCAATCAATAAAAAGAACAAACCAAAAACGTTAAGGCTACTAGGTGATGTCCAGGATCCTTTTCCAGATGAAACTGCAAAACAATTAGACAGCCAACTTACCCAGACATGCTTATATCTGCCAGTCATTGAGGCAAGACAAGAACGACAGCAAAGCAAGCAACGTATGAAAGAAATTAGTAGGAGTCTTCATTTTACCAATGATGTGGTAGCATTACATTGTTCCCATGAATTGGAATACAACAAGGATGAACTATGTAAGACTGTATATAAAGGAAGTACAAAAGACAAAGCTAAAATGATAGGTGTTGCACGACATCATGATACACACAGGCTACCTCTAAACCACATGCCTTGTTATTTAAATGCATCAGGTTTAAACCTGTTGCCGAAACCCAATGCTTTTCTCAAAATTGACGAGGAAATGAAACACGAAATGGAAGATATTTTATGTTCTGTTGCCAAGACTACCAGACCATACAGGTATAGTATTGTGAAAATAGATAGACATGATGTTCCTAAATCTGCTGAATCTAAATCAGAATGGGACGAATATGTTTTGTCGTTGCTGAGTGAATCTACAGCCAAGTGGATAACAAGTGAATTCTTAAGTGGTGCTCAGCACGTAAGGTTGGCGGGTTTCCTGAAGGAGCGGTACAAAGAGGAAGAAAATGGAAAGGAGACACTTAAATTTGAGAAACGGAAGGAATTAGCTACAACGAAAAGAAACAGCAAGGCTGGAACCGAGCTTGAAAAGATCTTAACTGAAACAATCTTCGATGCACATTTTTCACCTTCCTTTACTTTGCCGTCAGCAGTTGGTGATAAAAAGTTGATCACAGATAATGCTTTTCAGCAAGAGATGTTGGCTGGTGCATTTCCCGTAAAGGGGAAAAAGATTCCCAGAAAAAGCATTGTGCTCAGTACAAATTCCAAGGTGACCTTTGAAAAGAGACTTCAAGCAAATTATCCGGAAGATCCTCGTAAATGGTCTGACAGAAGAAGGAATTCCAAGGCTGCGAGAATACCAGGCAACAGTAAAGTTGTCAAAGGCTTGCAAAGATGGAATCAGCTTCCAGCTCTTTTGCAGGATGATTTCTATGTGCCTTCCTTTAAGTCATTTGGTGATGAACCTTTGAAAACATTAGGAAAAGACGAGCTTCTCTCCATTCATCAAGCAAGCGAGAATAACAATGTTTTCCGTATAAGTGAAGAGTGGAGAAATAAATGGTTTTTAGAAAAGCGCTGGCAAAATGTCTCAACAGATGAGCTCATCCAGGGCATGAACGACATTCATGACCATGTTAGATTGGCAGCGGTCGCTGCTTGTGGCAAAGCATCTGAATTTAGGCAGCGTAAGAGAGCTGAACAGAGTTTCGGGCCACCCTTGGATGATAAAGAGTTGTTGGACGTAGAGAAAATGAAAAGTGAACTTGAGCCGGCATTACTAGATTGCATAATAAAATTACTGGAAGATGGTTGCAAGCAAGTGAGAATTACAGCTGCAGTCGCCTTATGTAGTTTGAGTGTCGCGGAGTTAAAGGCGACTGAAATTCTTCAGGAAACTGTACAAAATGGCAGTGCAATTGAACGATGGATAGCTGCTCAATGTTTGGCGTCGGCAGGACATTGTACGGATAGTGTAATATCGGAACTTGTGTCAAAAACCTCGTGTAATGATCTTCTTCGTCAGGAACAGGCGGCCATCTTGCTTCTGAAATTAAGTCCCCAAACGTCTTTGGTGCATGCCATAGTAGCAGAGCAGCTAAATAGCAGCAGTTGCCAAGATAGACTTGTCGCTTGTCGTCTTCTTCCACGTCTCAAGGGAACCTTGAATAAGGATGTCGCGCAAAAGCTCTCGTACATGATGTGGAATGACTGGCAAAAAAGTGTGAGAACAGCGGCATCGCAAGCGCTAGGGAGAACCGGAAATGGAAAGCTTGTTCATGATGCTCTGTTGAAAAGATTATTGGATGATAACGAAAGATTAAAAGTGGACGCTCTTCGAAAGCTGGCAAATCTTGGTATTATGACGGCGCATTTACTTCCTGCTTTTCTCTCTTGTTTTACCAGCGAGTTTGTGTCAGTGAGGATCGAGGCAGCGCTGGCCGCTGGAGTTATCAACACGCCGGATGATGACATCATCGCTGCCCTAGTTAAATTAGCCAATGAAGATCACAGTTGGAAAGTGAAGGCTCACGCCATCAAAGCTTTGGGAGCCATCAAAAAAATCACCGATGACGTCGTTGATATGTTGGTGTGGAGCATGCGCTATGGCAAACTGTCCGCTGTCCGTGCGGAGGCATGTAACGCCGTCGCAGAACTTGGTTTGAAGGATAGTCGTGTCTTGAGCGTTCTTCAGGATAGACTCATAGTGGAGACGGAAGAAGTTGTACGCAGCGAAGCTCGCCGAGCGTTGCAATCCTTGAACGTTGAATTCACTGGCGATGTTGAAATGATCAACACCATTCGTTCCGAAGTGAAACGGTTATGCAACAAAACCAACGTAGTGTCATCCATCTTGGAAAAAGACAAGCAAGAAAGTTTCGACCAAGACTATCAGCGAATGATCGCTATCGATGACATCGACCGCTGTACAAAAACCACGCCGACTGAAAGATCGATAAAATCCAGCACCTGCTCACAGCTTGCAGGGTGGGACCCAATCCTTGCTGGATTTCGCGCTCGTTCTGTTATGTCAGAACCATCTACACCAATCGTATTCAAAATGGAACGATCCCTTTTGCCAATGGACCTGAACAGCGCTACCTCTGAGGGAAGTCTGGGTTCGAGGGATGACCTCGATTCGGAGTCCGGAAGGTCTGACATCACGCCTGGGGAATTGGAAACAGTTGGCAATGAGGACCATTAG

Transcript

Csp0G101900

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13646 all species →	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR004155 all species →	Repeat	PBS lyase HEAT-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12697 all species →	PBS LYASE HEAT-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008612 all species →	Biological Process	peptidyl-lysine modification to peptidyl-hypusine	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019135 all species →	Molecular Function	deoxyhypusine monooxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24813	HEATR4; HEAT repeat-containing protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.