Gene detail

Detailed information of Csp0G128570 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00221:150358...153317
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04545 all species →	Sigma70_r4	Sigma-70, region 4	Domain	Interproscan
PF08275 all species →	DNAG_N	DNA primase catalytic core, N-terminal domain	Domain	Interproscan
PF01807 all species →	zf-CHC2	CHC2 zinc finger	Domain	Interproscan
PF04539 all species →	Sigma70_r3	Sigma-70 region 3	Family	Interproscan
PF13155 all species →	Toprim_2	Toprim-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007630 all species →	Domain	RNA polymerase sigma-70 region 4	Interproscan
IPR050219 all species →	Family	DnaG Primase	Interproscan
IPR037068 all species →	Homologous_superfamily	DNA primase, catalytic core, N-terminal domain superfamily	Interproscan
IPR013264 all species →	Domain	DNA primase DNAG, catalytic core, N-terminal	Interproscan
IPR036977 all species →	Homologous_superfamily	DNA Primase, CHC2-type zinc finger	Interproscan
IPR006171 all species →	Domain	TOPRIM domain	Interproscan
IPR000943 all species →	Domain	RNA polymerase sigma-70	Interproscan
IPR002694 all species →	Domain	Zinc finger, CHC2-type	Interproscan
IPR034151 all species →	Domain	Bacterial DnaG primase, TOPRIM domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR030846 all species →	Family	DNA primase DnaG, bacteria	Interproscan
IPR006295 all species →	Domain	DNA primase, DnaG	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR007624 all species →	Domain	RNA polymerase sigma-70 region 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30313 all species →	DNA PRIMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003896 all species →	Molecular Function	DNA primase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006269 all species →	Biological Process	DNA replication, synthesis of primer	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02316	dnaG; DNA primase	EC:2.7.7.101	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.