Gene detail

Detailed information of Csp0G142650 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00253:3975865...4003015
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G142650

ATGAGCCCACGGGACACTCCGCTGACTGTTTCTCCACTTAACATCCAGCTAAACCAGAAATCGGGCCGATTAATCGTAGTGTGTAAACGTACCTTTAACGTAAATAAATGGCGTGACGGCTGTTTACCTCGCACCAGTCTCACGCGCTCGATACAATTGTGTTTAGGTGGAGGAGCGTGGCTGGTTGCTTACAAAGCAGAGCAACGGAGACGTTTTAAAGCTGTTCTTTGTCGAGATCCTGACGTTTCATTACCAGGAAAGTGTGTTGGCTCTGTATCCCAAAAAGGTTTTAAAACCACCAAGACAGATGAAGACAAGACAAGAAAAAAACTAGATGGGTTCTATTTGATGAATTTATTTCATATACATGATCCACTTGATTTATGTAACATCAATATTTGCGGAAAAGGATTAAATCAGGTTAATGAGGAAGACTTTTCATTGTTTGAGAACATATTTCACATTGATGCTGCAGAAAATAACCTGCTACTTATGAACTTTAGGAAATTTCCATCTTTGAAAGAACTGGAACTTCCCTTAAATGAGTTATCTGGAAGTATAAACATTGATGAAAAGGATTTCCTACAGTTAGAAACACTTGATTTATCTTGCAATCATTTAACTAGCAATGATATTCTTGCTCTTGGTATCTTGCCAGCTCTCAAAGTCTTACATTTAACAGGAAATCATCTGAATGAGTTACCATCAGAAATGTCCCGATCCTACTTTAGTTCAGAAGAAGGACGCAGAAAACAGCGGTTTATGTGTTTGGAAAAATTGTGGCTTGATCAGAATGAATTGACAGACGTAAACACCTTCACGACTTTGGCTGGACTCAAAAGATTGCAATATTTGAATTTGGAGCACAACGATATTTCATATGTGCCGCAGCTGAAACTACTGGAACCGAAAACAAAGTTACATTTGAACAATGGTAGTAATGAGCCGTACCCTGAAAGCAGCCCTTCTACAGTGGCTGAGGAAGATCCCAAGCTGATATTGAAACCAAGCCCTAATATTGAGAATGTTTTGGACAGTAAACTTGCAGACGTAAATAACAAAATCAATAGTCTTGAGGAAATGCTGTATAATGACAACGATGAAAGAAGCGATGTCTCAAATAATGCTGCCAAAGGAGAAGCTATTAACTTAGTTAATGGACATTTGGATGATCTTCGAGTATTACCATTCCCATCATTACGACATCTCAATATCGCTAATAATCATATTGAGGAAGAGGAAGGATTATTAGCACTCTCTTCGTGGCCAAAACTTGAAGAACTTTTGATCTGGGGGAACCCAGTGGCATCATGTGGTAAAGGGGGTCCTCCTATCGTTGCTTATCACCTTGGACTTCTCGCAGGAATTGAAGTTACTAGGAATAAACCATCAAAAAAAACAAAGAACTTAGCCTCTCTGGTAGTTATCAAGCATCCGAGACGTGTGCAAGATTTACCTCCAGTTGCTTACAACAGAAAACTGTTAATGTTAGATGCACCCAAATATCAGGAAATCTCCTATGGAAAGCCAAATGTAGTCCGACCACTGCCTCCAATTTCTGCCCCTTGTAAGGAAAGCAAACATAAAAGTACCAAAAGGGTTTCATCTGCGCCGGCAAAAGAACGAAAAAAGACGAATGATAGTGATGTCACTGAAGAATATCGCGAGGATCGTCCAGAATCACTCAGAACTAAATTACGTTCTGCTGAGTTCCATCGTCCAATCCAAACACAAGAACAATCGTCAAGTATGGAATCTACCGGGGATGTTTCTCCCAGACATAGCCAAGCTTTTTCTTCACCGGAACATCGAGTGTTTTTAACACAGGTTGACGAACTGGATAAGGAGGAACTTCTTTTTTCCAATGATGGTGAAACAGAGAAAACAGAAGAGAAACCTGTAGTTGATGATGTTCCCAAACCAGCTAATTTACCTCAGAAGTACAAAGGTTATGAAGAGCTGTTGGATATCGATGAAAATATCGCAGATGATATTAAGCTACCTCGTGGTGTCCATGGCAACGTGAGAGCTCTGCAATATACTCTTGATCACCCGCTTGTATTCACGGATCATTCTGCAAACAATTATGCAAGAAGAAAAGCAAAAAGAAACAAACAAACAGCTTTATCAACCCAAATGAACTCTCGCACTAACACTGTGGAAGAACTTGGAACCATCCTTGACAAAATGCGCACACATTCTAAAACAGTAGAAAGTAATCTAGCCGACGTATTGAAGGAATTTGATAATCCAAGAATAAAAAAGGAGTTTAAAGAAGCCAAGAGACTATTGAACGAGGTGCAAACTAAGTACAATGAGGTGAGATGTCAATCGCTGAACTCAACTGCCATGGCTGGTGAGATTACGAAAAGAGAACTACCGTATTCATCACCTGCAGCATCCCAAGGAGCAGAAAATATATCGTAA

Transcript

Csp0G142650

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22710 all species →	X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G142650.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.