Gene detail

Detailed information of Csp0G191320 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00403:93090...144174
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20645 all species →	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033599 all species →	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan
IPR048538 all species →	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576 all species →	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668 all species →	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790 all species →	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860 all species →	Cellular Component	RNA polymerase I core factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G191320.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.