Gene detail

Detailed information of Csp0G199750 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00414:1961003...2002208
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G199750

ATGGCGTCAAAAAGTGTCCCGTTCCTTGGCTGGATATGTTGCTTCTTACTTATTCAAACTGTATTTGGCTTTTACCTGCCCGGCTTGGCGCCTGTTTCATATTGTGAGAAGGGTACAACTGATGGCAAATGCAAGAGTTATATACCTTTGTTTGTTAATCGATTGGATTCCACTGAAACTATCATACCATATGATTATAACAGTTTTGATTTTTGCCCTCCTAATATAACAGAGTATTCTCCCTCAGAGAATCTTGGTCAGGTTGTTTTTGGTGAGCGGATTCAACCATCCCCTTATAATGTGAAGTTTAATGAACAAATAAATTGTGCCAAGGTTTGTAAGAAGTCGTACACAAAAGATAACTCTGGTGACATTGCAAAACTTGATTTTCTGAAAAGCAGTATGAAGCTTAACTATCAACATCACTGGATTATCGACAACATGCCAATAACATGGTGTTATGAAGTAAACGAAAATGACCAAACTAAAAAATATTGTTCAACTGGATTCCCTGTAGGCTGTTATGTTGATAGCAGAGGTCGACAGAAAGATGCTTGCGTAATAAGGCCCAAAGATTTTTCCGCACGTGATACCTACTACATGTTTAACCATGTTGACATTACTATCGAGTTTCATGATGGAAAAGACGAAGACTGGGAGGGCGCTCGATTGCTCTCTGCCAAACTCTGGCCAAAGAGCTGTTCTGACGGATGTAGTGATGCGTGTACGCCAATGGCTATTCCTGCTACTTTCCCTGCAAAGCAGAAAGAACTGGTGATATCCTACACATATTCAGTGAAATTTGAAAAAAACAACAACATCAAGTGGGCCTCTCGTTGGGATTACATTTTGGACTCCATTCCGCATACCAGTATTCAGTGGTTCAGCATCATGAATTCTTTGGTGATTGTTCTTTTCTTATCTGGCATGGTTGCCATGATTATGTTACGCACCTTACATAAAGATATTGCCAGATACAACCAACTTGATTCTTCGGACGATGCTCAAGAGGAGTTTGGTTGGAAATTAGTTCACGGAGACGTTTTTCGTCCTCCAGGAAAAGGCATGTTTTTATCTGTCATCTTGGGAACTGGAACCCAAGTGGTGATGATGACCACCATAACACTTGTTTTTGCTTGTCTTGGATTCCTTTCGCCAGCCAACCGTGGAGCACTCATGACTTCTGTTTTGGTTTTATTTGTTTGCCTTGGAGGACCAGCTGGTTACATTGCTGCTAGGATTTACAAACTATTTGGAGGTGAAAGATGGAAGACTAATGTTCTGTTGACATCGTTTTTGTTTCCTGGAATCATATTTGCCATTTTCTTTGTCTTGAACCTGTTACTTTGGTCCAAGCAATCATCTGCTGCCATTCCTTTTGGAACATTGGTCGCATTACTTGCCTTGTGGTTTGGAATCTCAGTTCCGCTCGTTTTTGTTGGCGCTTATTTTGGTTTCAGGAAACCGGTCATCGAGTTGCCAGTACGAACCAACCAGATTCCTCGACAAATCCCTGAGCAGAGTTTTTACAGTCGAGCTGGTCCTGGAATAATCATGGGAGGTGTATTACCATTTGGCTGTATCTTTATCCAACTGTTTTTCGTCCTAAACAGCATTTGGTCGCATCAGATTTACTACATGTTTGGATTTCTGCTTCTAGTTTCGGCAATATTAATTCTCACAGTTTCAGAAACCTGCATATTACTGTGTTACTTTCATCTTTGTGCCGAGGATTACCATTGGTGGTGGAGATCTTTGCTTACCGGCGGATGCACAGCGTTTTATCTTTCCTTGTACTCTGTGTACTTTTTCCGCAAATTGACTATCGTTGGTACTACTAGCACGATGCTGTATTTTGGCTATACTTCCATAATGGTTCTGTTGTTCTTCTTGTACACAGGCACGGTTGGTTTCTTTTCCTGTTTCTTTTTCGTCCGAAAAATCTATGGCTCCGTTAAAGTAGATTAAAAGGAACTAAGTGTGAACTTCTCCAATTAAGACGACGGTAGACAATAGTAATATTCAGTATTGGATTTACCTCTTGTACCTGTACGTCGTGTGTACCTACTAACACATATCTAATACGTTGTAATCTCTTTCTCTTGTTTTTACCCAATTTACTTAGTGAATAATCAATTTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02990 all species →	EMP70	Endomembrane protein 70	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004240 all species →	Family	Nonaspanin (TM9SF)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10766 all species →	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072657 all species →	Biological Process	protein localization to membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17086	TM9SF2_4; transmembrane 9 superfamily member 2/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.