Gene detail

Detailed information of Csp0G200090 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00414:2734194...2796300
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G200090

ATGGCGGACCAAGAAGCTCAATTCGAAAGTTTACTTCATCATTTCATGTCACCGGACAATAATACCAGGCAGCAAGCTGAGACACAATACACCTCAATTCCTGATCCCACAAAGGTTCAGTTCTTGATCAGAGCACTTCGTGTTTCACCAGCTGAAGAGGTTCGTCAGATGTCAGCAGTATTGCTAAGAAGATTATACTCTTCAACCGTTGATCTGTATGAGACACTAAATCCTGATCTCCAACAGTCGTCCAAAATGGAACTATTAAAGGGCATACAAGAGGAACAATCTGTTAATGTTAAGTGGAAAATATGTGATGCTGTTGCTGAAATAGCACGTTGTTTACTAGATGATGATGGGTACAATCACTGGCAGGAATTGCTTAAATTTCTACATGAATGCTCCAACTCTCAAGATCGAGGATTGCGGGAAGGATCTCTCCGTATACTATTGTCATTTCCTGGAATATTTGGAAATCAACAAGACCACTACCTTCAAGTTATTAAAGGAATGCTGTGGCAATGTTTACAGGATCAATGTAGTCCTCAGGTTAGGTTTATGGCAGCTCGGGCCGCTGTCGCCTTTCTTGTTGACCAAGTAGTTGAACTTCATCAAAACCAGTTTGCAGATGTTGTACCTGGAATATTACAGGCCGTGAAAGACAGTTTGCTAGAACAGGATGACAATGTACTCAAGAGTTTCATTGATTTGGCTGAGAAGGCTCCGAAGGTTTTAAGACTAAATTTAGACATCGTCTTAAATCTCATTCTTCAGACAGTATCAAATGCTGAGCTTGATAGCAATACAAGACAGCTGGCTTTGGAATGTATTGTCACCTTGTCCGAGTCAGCTCCTTCTATGCTTCGAAAGTACCAAAGTTTTTTCCCCCTTATTGTCCCTCAGATGTTGGCTATGATGGTGGATATGGACGACGACCCTGAATGGAGTACGTCAGATGACGTTGATGATGACGACTGCGACAGTAATGCTGTGGCAGGCGAAAGTGCGTTGGATCGGTTTGCATGTGGAATAGGGGGAAAACATATGTTACCTCATATCATCTCAACTGTACCCCAGATGCTTCAAAATGAGGATTGGCGGTACAGACATGCTGGACTAATGGCCATTTCCGCAGTTGGCGAAGGCTGTCATAAACAGATGCTTGGTATGTTGCATAACCTCGTCGACTCCATTTTACCTTTTTTAACTGATCAGCACCCTCGTGTTCGCTATGCTGCCTGCAATGCTCTTGGCCAGCTGTCCACCGACTTCGCTGAAGGCTTCCAAACAAAGTTTCATTCAAAGGTTGTTCCCGGTCTTCTGCTCGTTCTCGACGATTCCGAAAACCCTCGTGTCCAAGCCCACTCCGGAGCCGCTCTTGTTAATTTCTGCGAAGAATGTCCGAAGTCCATTCTTCTGCTTTACCTGGAAAGTATTTTGCAGAAATTAGAAATTGTTCTGCAAACAAAGCTCCAAGAGTTGGTCAGTAATGGAAGAAAACTAGTCTTGGAACAAATTATTACTACGCTGGCCACGGTCGCTGATACAGCTGAAGAGCAATTCGTGGCGTATTATGAACGTTTCATGCCAACGCTAAAGTACGTTATGGAGAACGCCGTGCCAAAAGACTTGCGTCTTTTAAGAGGAAAGACTATTGAATGTATTAGTTTGATTGGTTTGGCTGTTGGTCAAGAGAAGTTCTTGCAAGACTGTACCGATGTAATGCAAATGTTATTGCAAACACAATCGGAAATGGCCGAGATTGAAGCTGACGATCCACAGCTTTCTTACTTGATATCTGCTTGGGCGAGGATGTGCAAAATTCTAGGAAAAGACTTCAAAGAATACCTTCCGTTGGTAATGCCCCCAGTTTTAAAAGTTGCCTGTATCAAACCTGAAGTTGCATTATTAGATGCTGATGATCCGAAAAGTGAAAACTATTCAGAAAGTGATGGTTGGGAATTTGTTTCTTTGGGAGACCAGCAAAAATTTGGAATTAAAACTGCTGGTTTAGAAGACAAGAGTACTGCGTGTCAGATGTTGGTTTGTTATGCAAGGGAATTAAAGGACAGTTTTTCTGACTATGCTGAAGAGGTGGGTCACAGTGTTCCATTTATGAATCAGATTTTTCTTAACTGCTTGTTACTTGTTCGATCAGCGGCGGCAGATTGTCTACCATATCTTTTGGAAAGTGTCAAAGTGAAAGGCGATGGTTACCTGCGGCTGATGTGGGGTTATATATGGTCTGAATTACTCAAGGCAATAACAACAGAGCCAGAGCCTGATGTGAAAATACTTTTAATGGATTCGTGCGCAAGATGTATAGAGACGATAGGGAAAGGATTTATTACAGAAATGTTTTTCCAAGACCTGTCGAAAGTTTTGCACGACGTGCTTGATGAACATAGGAAACGACAAGAAGAACGACTTGAAAGACGAAAAGACGAAGACTATGATGAAGAAGTTGAGGAAGACCTCCAGGATGAAGATAGCACAGATGAGCTTATCTTACGAAAGGTTTCAGACATAATGCATTCATTATTTGGTTGCCACAAAGATAATATACTACCTTTCTTTGAGAGACTGCTACCCGACTTTCACGCATTGTTGAATACAAGTTATGTCACGGACAGACAGTGGGCATTGTGTATATTCGATGATCTTATAGAACATACCGGACCGGTATCGTTTAAGTATAAAGACTATTTTCTCAGACAAATCATTGGTTCCATTGCACACAGAACCACTGACGTTAGACAGGCTGCTTCTTATGGCATTGGCGTTATGGCTCAGTTTGGTGGAAAGGATTACGCTCCAACGTTTGCAGAATCCCTTCCGTTACTAAGCCAAGTAATCAACGATCCTTTATCCAAACTTCCTGAGAATATCGATGCGACCGAAAATGCAATTTCCGCTGTAACAAAGATCTGCAAATATAACCATGGTAATATTGCAGTGGATGAAATTATACCAATGTGGTTGTCATGGTTACCGATTGTAGAGGACAAAGAAGAGGCGCCTCATGTCTATGGTTACCTTTGTGACCTTATTCAAAGCAATCATCTCGTTGTCCTCGGGCAAAATTACAGCAATTTTTACACGGTATTGGGAATATTTGCTGGTGCTTTCAAATCTAATGTGTTGGACGATGATGAAAATATAAAACTGAGGATGACGATGATCTTAAAACAAGCTCAGTGCGGAGAGCTTCCGGCGAAAAAGAAAACGGCTTGTAAACATGCTTGA

Transcript

Csp0G200090

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF18808 all species →	Importin_rep_4	Importin repeat	Repeat	Interproscan
PF18829 all species →	Importin_rep_6	Importin repeat 6	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR041653 all species →	Repeat	Importin repeat 4	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR041389 all species →	Repeat	Importin repeat 6	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20222	IPO5, KPNB3, RANBP5; importin-5	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.