Gene detail

Detailed information of Csp0G200640 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00414:3728098...3743335
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G200640

ATGATGGAACGCTATCCAAGGTCTGAACGTTGCCATACATTTAAGGCGAGATTTGGTCCTGTTTACCTCAACTTTAACCCAGTCGTAACAGTTTTGTCAGGCATTGTCATTTGGGGTTTCGTAACTTGGTGCATTATCGATACTGAGAACGCCAACGAAAAGATGTCCGAGACAAAGAACTGGATAACAAAAACGTTCACATGGTTTTACATTGGCACTATCAATATCCTGATTCTCTTTCTATTATACTTGTATTTTTCAAAATACAGCGACCTAAAACTTGGCAAAGATGATGAGAAACCGGAATTCAGTGATGCCTCGTATTTCGCAATGTTGTTTGCTGCCGGAATAGGAATTGGCCTATTTTACTTCGGCGTGGCCGAGCCAGTATGGCATTATGAACCAAACAAGAATGGAACTAGTCATGGAAACCGTTATTGGGGAAGATATTCAGACAATCAAAGAGCCCAAGACGCCATGAATGTAACGTTTTTTCATTGGGGATTTCATGGATGGGTTGTCTACTCGATAACTGGTTTATTGATGGCTTTTGTCTCCTATCGAAAAGGTCTGCCGATGACCATCCGATCTTGTTTCTATCCTCTCTTGGGAGAACGAATTTTCGGATTTTTTGGAGACATAATCGACGTCTTCTCTGTCGTGTCAACCATGTTTGGTGTTTGTACTAGTTTGGGCATCGGTGTCATGACTCTCAACACTGGCCTCAATCGCCTGTATAATGGTATTGAAGAGAGCACTATCAATCAGATTATCATCATTTGGGGTGTGACTATGGTTGCTACCATTTCGGTTGTTTCTGGATTAAAGGTTGGGATACGTCGCCTGAGTGAACTGTGTTTTGGTCTCGGTATGTTTCTTATGTTGTTTGTTTTCTTTCACGATGACACCTGGTTTCTTCTCAATCTTTATGTCCAGAGTATAGGATACTATTTCCAGTCTATACTCCAACTTGGATTCCATACAGATGCGTTTGCTCAGCTGGGGAATGCTCCCGATGGAAAAGAAGCCACTGAGTGGATGAGCAATTGGACAATCTTTTACTGGGGCTGGTGGGTGTCGTTCTGTCCATTTGTTGGAATGTTTATCGCTAAGATTTCACGTGGTCGAACCATTAAAAGTTTCCTAACTGCCACTATGACCATACCTGTGTTCTATATTTTTTATGTGGTTTTGTATATTTGGCGGTGCTGGTTTGAAAATGGAACCAACCCATTATATGATGACGGCAACGTGAGGTTGTACAAATTGTCTTGTCGAGGGAGTTCTCATATGTTTTTTGACTTGCTTGAGCAGTATGGCGATAACCTTGGTGTTTTTCTCAACATTATTTCGCTCATCGGTATTGTTTTATACTTCGTGACCAGTTCAGATAGTGGTTCTCTGGTTATTGATTGTCTCTCGGCAAATGGTAATCCAAATCCTCCCATCGCACAGCGCATCTTTTGGGCGTTAACCGAAGGAGCGTGCGCTACTGCATTGCTCAAATCGGGAGGTGCAACGGCTTTGAACGCTCTACGTTCTGTATCTATTACCGCTGGCCTACCGTACACTTTCATTCTTTTGTTTATGTGTGTTGCGATGTGGCGTGCGGTTAAAGAGGAAACTGGTGATATTGACGAGAATGCAAGTGATTTTGCTTCGAGTATCTTTGATATGTTTGACATCGTGTCATTGAACAGTATTAAAAGGTTGTTTATCGGTATTGTTGCACCATGGTGGCCAGCAGGTCGTGCTGCAGGGAAAGTGTACCGCAAAAAGTCGTGGTCGTATATGGTCATTATGGCTGTTTTGTTCTATGGGTGGGTGTTGCTTGAGATTCTCCAGTTGGCTGACGTTGGACTGGCTTATGTAGGTTGGGTCGTGTTATGTGGATTCTTTGCTTATGTTGTTGGAATACGAAGTGCCATTAGAGAAGAATGTACCCTGTTAGGAAATATTGCAGAAGATGCACTTCTTGTGGTTTTTCTTTATCCGTTGGCTGTTGATCAAATGGAGAAACACATGTTGATAGATGAAAAACAGAAGAAAAATGATTCTGGTTGCTCAATGGTGGTCAAGAATAGCGGTGAGGCGGATGCAGAAGTTGTTGAAACAGTTCCAGCTACTCGAGTTTAA

Transcript

Csp0G200640

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan
IPR000060 all species →	Family	BCCT transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02168	betT, betS; choline/glycine/proline betaine transport protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.