Gene detail

Detailed information of Csp0G201170 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00417:603830...629958
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G201170

ATGGTTATGGGATCAGCGACTATGGATGAGGCTTCTACCTTGGCTGAAATGGCCCACCGTGAATATCAGACAGGGAACTATAATCGCGCAGAACAGCTGTGTATGCAGTTATGGAGAAGAGATCCGTCCAACACTGGTGTATTGCTTCTTTTATCGTCAATTCATTTTCAGTGTCGAAGAATGGATAAATCAGCTCATTTTAGCACGTTGGCTATTAAACAGAATCCTGTGTTAGCCGAAGCCTACTCCAATCTTGGGAATGTATTCAAAGAAAGAGGGCAGTTGAAGGAGGCTCTGGATAACTACAGGCATGCCGTCAAATTGAAACCTGATTTCATTGATGGCTACATAAATTTAGCTGCCGCACTGGTTGCGGCCGGAGATCTAGAGGGAGCCGTTCAATCTTATGCTACTGCTCTGCAGTATAATCCGGATCTCTTTTGTGTTCGAAGTGACTTGGGAAACTTGCTTAAAGCTCTTGGAAGACTTGAAGAGGCCAAGGCATGTTACCTGAAAGCCATTGAAACTCAACCAAACTTTGCTGTGGCATGGAGCAACCTGGGATGTGTTTTTAATGCTCAAGGAGAAATTTGGTTGGCTATTCACCATTTTGAAAAGGTATTAATTTTCAACCTTGAAAACTTTTATATTAATTTTAGGGCAGTTGGTGCTTATTTGAGAGCACTTCAGTTGAGTCCAAATAATGCTGTAGTCCATGGTAACCTCGCATGTGTTTATTATGAACAAGGTTTGACTGACTTGGCTGTTGAGACATACCGAAGAGCGATTGAATTACAAGCTAACTTTCCAGATGCTTACTGTAATTTAGCAAATGCATTGAAGGAACAAGGAAAGACAGATGAAGCTGAAGATTGTTATAACGTTGCTCTCCGATTGAATCCTTCACATGCAGATTCACTAAATAACCTTGCTAATATAAAAAGGGAACAAGGTTACATTGAAGAAGCTATCAAATTGTACTGTAAAGCACTTGAGGTTTTCCCAGAATTTGCTGCAGCTCACTCCAACCTAGCTAGTATATTACAACAGCAGGGAAAACTTCAAGATGCACTTGTGCACTACAAAGAGGCCATTCGAATTCATCCAACCTTTGCTGATGCTTATTCAAACATGGGCAATACTTTGAAAGAAATGCAGGACATCCCTGGAGCAATTAGTTGTTATACTCGGGCCATTCAAATCAATCCAGCTTTTGCAGATGCACACAGTAACTTAGCATCTGTTCACAAGGATGCAGGTAACATATCAGAGGCTATTCAGTCGTACAGAACTGCGTTAAAGCTTAAACCAGATTTTCCAGATGCTTACTGTAACTTGGCACACTGTTTGCAGATCATTTGTGACTGGTCTGATTATGATATAAGGATGAAGAAATTGATTGCTATAGTAAATGATCAACTCGAGAAGAACCGACTTCCTTCTGTACATCCGCATCACAGCATGCTCTACCCTTTGTCAAGTGAGATTCGGACAGAAATTGCGAATAGGCATGGCAACCTTTGCATTGAGAAGGTGGCATTGCTCAAGAAGCAACCTTATAAGTATCCAAAAGATTTGAGAGACTGTAATGGTCGACTAAGAATTGGTTATGTATCCAGTGATTTTGGTAACCATCCCACTTCGCATCTTATGCAAAGTATCCCTGGCTTTCATGACAGATCAAACGTTGAGATTTTCTGTTATGCTCTTACCGCCGATGACAATACAAGTTTTTTTAAAAAGATATCACGTGAAGCAGACCATTTTGTGGATTTATCGCACATCTTGTGTCATGGGTCAGCGGCTGATCGCATTAACAGCGATGGTATTCATATCTTGATTAATATGAATGGTTACACAAAAGGTGCAAGAAATGAAATATTTGCCTTGAAACCATGTCCAATTCAGGTAATGTGGTTGGGATACCCTGGTACAAGCGGCGCTCCTTACATGGATTATATTCTGACAGATCGCGTAACATCTCCACCTGAACACAAGAATTCCTATTCCGAAAAATTTGCGTACATGCCTAATACATCTTTCGTCGGAGATCATAAGCAGATGTTCCCTCACCTAATGCAGTACTTGCGGACAGCGGGTGACAACTCCAGTAACCAGTCCCACAGTTCACAACCCACCCAGAAATTCGTCAGCGAAGTTGACGTCAACCTTCATTACAAAGTGGTCAAACTGGTTGAAAGGAAAAGTCGTGACTACGAGAATTGTAAAGATAGCGGAGAAAGAGTGCCTTCTGTATGGCCTTTAACCACTCGATCGCAATTTGGTCTTCCTGAAGATAGCTTTGTCTTCTGCAATTTTAATCAACTCTACAAGATTGATCCAATTACCCTTAAAAACTGGGTCAATATTCTCAAACAAGTTCCAAATAGTGTCCTGTGGTTGCTCCGTTTCCCTGCTGTTGGAGAGCCAAACATTAAAGCTCACGTCCAAGCCTTAGGTCTGTCTTCAGAACGTGTTATTTTCTCAGCTGTTGCTCCGAAGGAAGAACATGTTCGAAGAGGGCAGCTTGCTGATGTTTGCCTGGACACTCCATTATGCAATGGTCACACAACTGGAATGGACGTCCTTTGGGCCGGTTGCCCAATGGTAACACTACCGCTAGAGACCTTGGCTTCTAGAGTGGCAGCATCACAGCTGTGTACCCTTGGAGTGCCTCAACTTGTTGCCAAGTCACGAGAAGATTATGAAGGCATCGCAGTCCGACTTGGAAATGATACTGAATTTTACGCTGACATTAAGAAAAGAGTATGGAATGGCAGGTTGGAAAGTCCATTATTCAACATCAAACAATATGCCCACGACATGGAAGTCGTGTATAGAAAAATGTGGGAAAGATACCGAAATAACATGGAGGTGGACCATATCATGGACTAG

Transcript

Csp0G201170

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13844 all species →	Glyco_transf_41	Glycosyl transferase family 41	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR029489 all species →	Domain	O-GlcNAc transferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44366 all species →	UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09667	OGT; protein O-GlcNAc transferase	EC:2.4.1.255	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.