Gene detail

Detailed information of Csp0G211650 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00429:455201...467976
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G211650

ATGTCTTTTCATCAACCTCCACCGTCCACCATGGCTCCTCTTCATGTTGGTGGACAAGGTAGTATGATGCCAAGCTATATGCCACCGTCAGTCGGCACGTTACCCCCTGGTTTACCACCGCCTCCTTTACCTCCTCCTTTCCCTGGCTTCCCACAATCTACGCGTCCACAATATGTTAGAAGACCAAATGAAGGTTATGAGAAGAAAAGAGAACAGTACCGGAACATTGGAAGTGACAAGCCAACAGTAACAGTGTTTGTAGGTAATATTACTGAACATGCAAGTGATGCTCTCATTAGGCAGTTGCTAATGAAATGTGGTATTGTTGTGAATTGGAAACGTGTTCAAGGTGCAGATGGTAAATTGCAAGCATTTGGGTTTTGTGAATATGTTGATGCAGAAGCTGGTTTGCGAGCCATTAGACTGCTTCATGATCTGACAGTTGGAGAAAAAAATTTAGTGGTTAAAGTTGATGCAAAAACCAAGGCAATGCTTGAGGAGTATAAGAAAAATAAAGCATCAGAACAGAGAGAAGCAAACAAACCAAATGAAGACTTGCAAAATGGAGAAGAAAAATTAGATGAAGCCACCCTGGAAGCAGATGCTGCTGTGAAAAAAAATATCACTGGATTGTTGACAGATAATTCAGATGTTCTTTCAGGAAAATTTGCAGGCTCAATCAACAAATGGAAAGCTAGTCATAGTGGAAATGAGGAAAATTTAGAAGGTATGGGAATGGATAAAGACAAAAAGCATTTGATCTCAAGAGAAATCCGCTTCTTCAGGGATGCATATAAGGATTCAGAAAGAGACAAGAAAGAACGTAGCAAAGAGCAGGACAAGGAATATGAGAAAGTGAACCAAGAGAATGATCGAGACCGGGATAAAGACAGGGATCGAGACAGAGGTAAAGAAAGACCGAGGGAGACAAATAGAAGTCAAGAAAGGGACACTGAACGGAATAGGAATGATGAGAGGAGTAGAGATCGGAGTAGGAGTAGGGATCGTGAGCGAGCAGGAAGAGAGGAGAGAGACAAAGGACGACAAAACCGGGAATTAGATGAAGATGAACAATATGAAAAAAGAAAACGAGAAAGAAAGCTAAAAGAAAGGAACCAAGCATTTGTGGAGCGCTTGAAAACTTGGGAAGCACGAGAGAGGAAAAAGCTTCGTGATTATGATCGTGAGTTGGAGAAAGACCGAGAGCAAGAGAATGAACTGTCACGAGAGAAAAAACACTTGTTAGAGTTCTTAGAAGATTATGATGATGATGGTGATGATCCAAAATATTACAGGGGAGGCTCGTTTGACAGGAGATTACAAGCACGGTTGGGAGAAATGGAGTCTGATGATAAAGATCGTCAAAGAGAACTCGAAGAAATAGAAGAAGTGAGAAAAAGATTGGGAGATAATGTTGGTTTTGAAGAAGAGGAAGAACAACGTGAAGAACCAGCAGTCGAAGAAGAACCAGAAGCAAGGCCGACCTTACAAGCAACGTTTAAACCTGCTGTAGTGATCGAATCTGCACCTATGGTCCCTTCTCCTGTACAGGAATCACCAAAGAACTCACCAAAAGTACATGTAGTAACCAAGCCAATACAAGAAGAAACTCCAGAGTTGGATGGTGAAACAACATCAAAGAAAACGTTTGGCTTTGAGATGAAATCAAAAGCTGCTGTGGGTTCATCAAATTCAAATAGGAAAAAACTTGGAACTGTGTTCAACAGTGAAGAAGACTCCGCAGCAAATAAAAACCCAAAACGAAAGCTTGTTCCGCTAGACTACTCAGAAGAAGAGATGAAAGCTGTGGCAAGTTCTGCTGCTAAATCTGCCGAAGAGAAGAAAAAGAGTATTAAGTCACTGATAGAAAGAATCCCAACGGCTAAAGATGAACTTTTTGCGTACTCGTTGGATTGGGAATGTGTGGATCAGTCCCTCATAGATCGTAGGATACGACCTTGGGTTAATAAAAAAATTGTGGAATACATTGGTGAAGAGGAACCAAGTCTTGTTGATTTTATGTGCAGTAAGCTGCTTGCAAGGAGTCCACCAGAAAATATACTTCGTGATGTGTCCATGGTTCTTGATGACGAGGCTGAGGTATTTGTTGTTAAGATGTGGAGACTTCTTATTTATGAAACAGAAGCCAAAAAAATAGGACTGGTTAAGTAG

Transcript

Csp0G211650

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034268 all species →	Domain	RBM25, RNA recognition motif	Interproscan
IPR052768 all species →	Family	Pre-mRNA_splicing_regulatory_protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18806 all species →	RBM25 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12822	RBM25, S164; RNA-binding protein 25	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.