Gene detail

Detailed information of Csp0G212850 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00429:2026424...2056447
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G212850

ATGGTGTACAGAAGACACGTACTCTGTCTTATTACAGAGATATATCTAATATTTTCAAGTATAAATTCCGTAACCTGTTTGGTAAAATGTCAAAATAATGCTTGCTCAGCTCCCATATCTGTTGCTACAGCTCGACAAGACTTTGTTGCAACAGACAATGACCACATACATTTTAAGAAGGGAGACCAAATAATAGTCATTAGTAAAACATTTGAAGAAGATACTTCTGTTTGGAGAGGAAATGTGAAAGGATCTCCTGCTGGGTTTTTCTTTAGTGATTATGTTGAGGAAAATTCGAAGCTGGTCCCAGACGACCAATTGGTCACAGTTGTTTCAAACATGCAGGTAATGAAAACATTTGTAATAATGAGATATTTTTGTAATAAAGAGAGTATTGGCAACTTAACACAGCTTGCACAGCAAAACCTTTACAATTTTCTATTTGATAATCAAGAGGATAATCAAGAGGATAATCAAGAGGAGCTAGTTATGAGAAATGTGAAGGTCACTGTGTTAGAAGAAGGGAAACCAGAGACTGAATACAAACCATATGTTCATGGTGAAACTGATAGCAAGGAGGATGAGCAGGAAAAGGATGATCAGGGAATGGAAGAGCAGATAAAGGATGATCAGGAAAATGATGATGAGGAAAACGATGATGAGGAAAACGATGATCAGGAAAACGATGATAAGGAACAGGATGATCAGGAAGAGGGTGAGAAGGGAAAGGAGGATGGATATGATGATGGTAGGAATGATGATGCAGGTGATGATGCAGTGACCAAGAGTGACGTGGGTGGCCATGTGGAGACAAATGCCCAACAACAAGACAATACTCCTGAAAGTGAAGATTCCAGACATTCTGAAGACGGTGATCTTGATGATGATGCTGTAAGTAAAACAAAGCAGTCACTGGAGGAAAATTCTCCAAAACAAATGGAGGCAAATCAAGAAATACCTCCCAAAAAGATTGGTGATTCCAAAGATGATGATGATGCAGGTTATCAACCTGATGGCCACCAACATAAAGATGACATTGAAAGGAGAAAAGAAGAGATTGACTCTTCAGAACCCTCTGGTGTGGAACAGAGATCCGAAGCAGTTTTATCTGAAGATGTATCACAATCCAAAGAAAGTTACGTGCCCATTGAAAGTCACGAACCAAATGATGGTCAAGGTGAAGTAGAAAAAGAACCTCACGCTGGTAGCAATTTAAAGGAGAAATTCATACAAATGAAAGAACAGAGGTTTGGACTTGCTAAAGGGAGTGTTGATAATACACCAAAGGCAGTACCTCAGCCAGGAACAATAGATGAAGACTTCAGGGAGAGAATGAAAGAAGAAGCAAAGAAGATGGTTGAGATGATACCTGGTTTGGCAAAAGATGATAGGATGAGCAATGGTAATAAAGATGTAATTGATGTGGAAATGACAGTTGGTGATGCCGCAGGAGCAAACAAAGAATCTTTACGAGGAAATGATAAACACACAATGCTATTGTGTGATTCGGTGCCAAAAGACAAAAGGGATATCTGCCTTGAAGATGATAACAAGCAAAATTGTGCATTAGAAAACTGCTGCTTTGATGAGAGTGCTGAAAAGGGAAAGCAATGTTTCTTTAAACCAAGCACATTAGATTCTGAAAGAATTCCAGAAGAGAAGCCACAACAAAGACCAGACAATGTAATTGAGAGTACCAATTACCAACCCAATGAGAAGCCATTAGTTACAGATAATCAAGTTAATGAAAAAAAAAGTTTTGAAATCCAAGCTTCAGACAAACTTACTAAAAATCCTGTAGAACTTGCTGCTAGAGACAATAACAAAGAGAACGAGCAGTCGCAAAAAGAAAAGGATAGTTTTACCAAGTCAAAGATTGATGTCAAAGATGGCTTAGTATCAAGTGATGCCGTTGATGAAAGAAAAACGCCAGATTCTGGTGAATATTTTGAATCAACAGTGAAACGTTCAGGTACTGGTACTGGTGATGGTACTTCTACTCCAGGTGGTACTTCTACTCCAGGTGGTACTTCTACTCCAGGTGGTACTTCTACTCCAGGTGGTACTTCTACTCCAGGTGGTACTTCTACTCCAGGTGGTACTTCTACTCCAAGTGGTACTTCTACTCCTAGTTCTGTTCCAGATGGTAGTTCCACTGGCGATAGTACTTCTGTTCCAGATGGTAGTTTGGCTTCGTATGACACTGTCACTGGAATTGGTACTTCTGTTCCAGATGGTACTTCTGCTCCAGATGGTACTTCTACTCCTAGTTCTGTTCCAGATGGTAGTTCCACTGGAGTTGGTACTTCTGTTCCAGATGGTACTTCTGCTCCAGTTGGTACTTCTACTCCTAGTTCTGTTCCAGATGGTAGTTCCACTGGAGTTGGTACTTCTGCTCCAGATAGTACTTCTGCTCCAGATGGTTCTTCTACTACAGATGGTACATCTGTTCAAGGTGGTACTGCTGCTCGAGATGGTACTTCTTCTGCAGATGGTACTTCTGTTCCAGATAGTAGTTTCACTGGCGATGGTAATTCCAATCCAGACAGTAGTGCTGCTCCAGATGGTAATACTGCTGGTAATGGTACTTCTGCTGGTGATTTCACTTCTGCTCCAGAAGATGGTTCTGTTCCCAATGGGAATGACAGAACTCCTTCTGCAAAAGTTGTTTCTGATGAAGACATTGAATATCTTATCCACGCCGATGCTGGTGATACATTAACCAACAAAGATGTTTCGCTTGAGAAACCAAAAACCGATATTCGCAGGGTCGAAGAAGTTCCTTTATCAGACGATGCAAGTGCCACCGACCTGGAATCGGCGAAACATGATGCCGGTAGTGCTTCTGAAAGAGAAAGAGCTAAAGATGGAGACTTGCTTCTTAAGGCAAAAGACAAAAGTCGTGATGATGAAATAAGATCTACGGAAAAAAATGATGGTGGAAAATACAGAGTTGATCCAGAGTCAGATAAAGAAACAAAGAATGTTCACGAACAAGCCACTCAAAATGAAAATGTGGCTGAAGAAAAGGAAGCCATTGTCATGAGTGATGAAGATTTCAGTGATGATGACGATGAGGAGGAGGAAAGTTCAGGTGACGATAGACAACAAAAGTTCAAAAATGTACAAAAATTTAAGGAAAAGATTGCAGAAATGGTCAAAGAACCTGAAAACAATGACACAATAACTACAGAAACAATTATTCCAAAAACTAAGTTAAACAATGAAATGATTTCTGATGAAATATCACCCGGTTCAATATCATTCCGAAATCTGAAAACTGACACCAATGTGGGTGAGAAACCGGAGACTAATGATGGACATAAACTTGAAGGCGAACTTGAATCGAATAAGACAAATAAAGATATTAGAAACACCGATGATGCTCCTAGTACAATTGTCCCGGATACATCTCGATTGTTTGAGAAGAAAAAGCTAGATTTTAATTCAGTTTGGCTGAAAAACAAACTAAAAGAAAAGGCAAAATTTATTGTGGAAAAGTACAGCAAAGGTTCGGGAGCCGGTGAAACGGCCGGCAACTCGAAGAACGACAAGGAGTCGAAGCCAAATGACGAAGACGAGGCCTCGATATCTGCACATGTTGACGCAGAACGTGAACCTGTTGCACACGACTCTGGTACGTGTACAAAGGAAGGTGGTGAATGTGTGAAGACATCTTTCTTTTCTTCCAAAACTCAGACGTCTGGTTTAGAAATGCAAGTGGAATTCGCAAAGGACATAGAGAAATTGGAAGACGTTGAGATTAAACAGGACACTGTTGAAGAGGAGGAGATAAAAGAAGAGAAAAACCAGACCAAAAGAATGTTGGCTATTGCTGTGAGTACCTTTCGCGAGTATCACACCCGTGTTGGGGATTATGGATTGGTTTTACTGACGCCATTTTGGAACATGGTCAAGGTGCTTGGAGAACAGATGGGACTGGCAGAGGTTATTAGTCAGTTTGAAAATGAAATGAACCAAGGCCCTCAAGGAATGATTTCATTAACCTTGCTTGTGATCGGCTTTTCTCTATACTTCTTGTTAAGTGTGACGTGTGCCAAACAACTCCCTCGTTGTTACGGTCCTAATTTGAAAGATATTTTCAAGACATACGAAGGTCGAATCAAAATCCTCGAAGATGAATGTGCTAGTTACGATGAAGAAAACAAGCTAATAATAAACAAGGCTTCTGAAGATGTCAGAAAGAGTTCTGCGTTGAAGCAAAAACTACATGAGGAAACGCACGAACGAGGGTTATCTGAGGGACAGATTTCAATTCTTAAAGAAATTGTTAAAAATCTAAATGAAAAAGTCGAATTGCTTGAAGAGGAATCAAAGAATTTGAAACTATCTCTTGAAGAGAAAAATACTCATTGTAAATGGCAGGAGGGACAGTTGGCTGTCAGTGCAAACGAATCTGAGGAAAAAACAAATAACATTGGAGAGTTGAAAAAATCACTCGATGTTAAGGAACAGGAGAAAGACGAGCTCAGAAAAGAAATCTTCGATTATAAAGAACAACTTTGTAAAGCTGAAGATGACACTGATCGACACAAAAATATGCTTCAGGACTGGAATGATCGGTACTTGGAGCTGCAACAAAAATACGATGATGTTTCTGTCACGAGACAATCACTAGAAGAACAATTGCATTTTAAAGATAACGAAATTGAGATTCTACGTGAATCCCTTGTGCAGATTAACAGTGCTGTCGACGTTAATGGCGACGAAGAACTGCCCGAAGAAGAACTGAAGGAAGAGCGATCAAAGAAAATTAAAGAGCTTATGGATGTTTCGCAGATTCGATCAGATTATAAACTATGCAAGGAGGAAAAGGAAAAATTAGAAGATTATGTTAAGGAAGAGGTTGAAAGAAGAGAGAAGTTGCAAGGTGAAGTAGAACAATTTGAGATTGATCTCGCGAAGTCGAAGGCGTCTGAAGAGGAATTGAGATTTAAATATAGAGAAACAGAAATTAAATTAAATGCATTACAAGATTATTTCAAAAACATGGAAAGTGATTTACACAGAAAACTCACTCACGAAGAAGCAGCGAGACTAGCAAGCGAAACCCAGCTTGAAACAAAGCTTCGAGAAGCATCAAGTGCAGTACAAGATGTTGAACTTTACAGAAAACAGGTTAACGAGTTAAGGAAGGAAATCGATGAAACCCAGCGAGCATTTCGTTCTCAGGTTGCTACTACAGAGGAGCGAGCACATGACAATTGGCTTAAATTCCGCTCTGCAGAAAGGGAATTAGAAGAGATAAAACGAGAAAGAGATGCTTTGCGAAGAAGGTTAATGGACAACTTTACTCTAGAATCGCCAACTATGCATTCAGATTCGCCTTCCAGCGTCCGTACATCTAAGAGAAAGAATTCCAATCCTCCCTCGCGTGTCTCGCCGCTTGATGAAAGGAAGGATCGTACTCGACGTAAACCGCGTGACAGGAATTCCCCTCCTTCGTGGGAACCAACGGACACAGGACCTCCTCCACGTCGGAGAGGCCGAGAACACGACACGTCACCTCCACCTTCTTGGGATACTCACGTTGGTCCCCCAACACGTCGTCGTGACAAAGACAGAGAACTGCCCCCACCTCCTAGCGTTGGCCCACCGCCACGTCAGCGAGGACAAAGAGAGTCTCCTATTGGACCACCTAACATTGCTGAACTAGAAACCCAACGGGGGAGGCGTGATAGACATACACCTTCACCACCCGCTCCCCCACAAATCGTGGATTTACCACCTCGTCGTAGACGTCGGGATAGAACATCTACTTCCTCACCGCCACCTCCACCTCCCCCTAGCTTGTTACCACCTCGTGGGATTCCACCAACAGGGGTACCTGGTGGTGTGACTCTCGCTAAAGGTGGTTCAGTGAATGGTGCACCAGGACCACGTATGAATGTTCCATTCGAGACTCCCCCTCCCCCACCCTCGTTCGCTGGTAATGGACGATTTCCAGGACCAAGGACAACACAGTCATTACCCAATGGACCCTCTAGTAAGTTTCTCGTTAAACCGTCAACCATTTTGGCACGGCATTTTTGTTGA

Transcript

Csp0G212850

Protein

Csp0G212850

MVYRRHVLCLITEIYLIFSSINSVTCLVKCQNNACSAPISVATARQDFVATDNDHIHFKKGDQIIVISKTFEEDTSVWRGNVKGSPAGFFFSDYVEENSKLVPDDQLVTVVSNMQVMKTFVIMRYFCNKESIGNLTQLAQQNLYNFLFDNQEDNQEDNQEELVMRNVKVTVLEEGKPETEYKPYVHGETDSKEDEQEKDDQGMEEQIKDDQENDDEENDDEENDDQENDDKEQDDQEEGEKGKEDGYDDGRNDDAGDDAVTKSDVGGHVETNAQQQDNTPESEDSRHSEDGDLDDDAVSKTKQSLEENSPKQMEANQEIPPKKIGDSKDDDDAGYQPDGHQHKDDIERRKEEIDSSEPSGVEQRSEAVLSEDVSQSKESYVPIESHEPNDGQGEVEKEPHAGSNLKEKFIQMKEQRFGLAKGSVDNTPKAVPQPGTIDEDFRERMKEEAKKMVEMIPGLAKDDRMSNGNKDVIDVEMTVGDAAGANKESLRGNDKHTMLLCDSVPKDKRDICLEDDNKQNCALENCCFDESAEKGKQCFFKPSTLDSERIPEEKPQQRPDNVIESTNYQPNEKPLVTDNQVNEKKSFEIQASDKLTKNPVELAARDNNKENEQSQKEKDSFTKSKIDVKDGLVSSDAVDERKTPDSGEYFESTVKRSGTGTGDGTSTPGGTSTPGGTSTPGGTSTPGGTSTPGGTSTPGGTSTPSGTSTPSSVPDGSSTGDSTSVPDGSLASYDTVTGIGTSVPDGTSAPDGTSTPSSVPDGSSTGVGTSVPDGTSAPVGTSTPSSVPDGSSTGVGTSAPDSTSAPDGSSTTDGTSVQGGTAARDGTSSADGTSVPDSSFTGDGNSNPDSSAAPDGNTAGNGTSAGDFTSAPEDGSVPNGNDRTPSAKVVSDEDIEYLIHADAGDTLTNKDVSLEKPKTDIRRVEEVPLSDDASATDLESAKHDAGSASERERAKDGDLLLKAKDKSRDDEIRSTEKNDGGKYRVDPESDKETKNVHEQATQNENVAEEKEAIVMSDEDFSDDDDEEEESSGDDRQQKFKNVQKFKEKIAEMVKEPENNDTITTETIIPKTKLNNEMISDEISPGSISFRNLKTDTNVGEKPETNDGHKLEGELESNKTNKDIRNTDDAPSTIVPDTSRLFEKKKLDFNSVWLKNKLKEKAKFIVEKYSKGSGAGETAGNSKNDKESKPNDEDEASISAHVDAEREPVAHDSGTCTKEGGECVKTSFFSSKTQTSGLEMQVEFAKDIEKLEDVEIKQDTVEEEEIKEEKNQTKRMLAIAVSTFREYHTRVGDYGLVLLTPFWNMVKVLGEQMGLAEVISQFENEMNQGPQGMISLTLLVIGFSLYFLLSVTCAKQLPRCYGPNLKDIFKTYEGRIKILEDECASYDEENKLIINKASEDVRKSSALKQKLHEETHERGLSEGQISILKEIVKNLNEKVELLEEESKNLKLSLEEKNTHCKWQEGQLAVSANESEEKTNNIGELKKSLDVKEQEKDELRKEIFDYKEQLCKAEDDTDRHKNMLQDWNDRYLELQQKYDDVSVTRQSLEEQLHFKDNEIEILRESLVQINSAVDVNGDEELPEEELKEERSKKIKELMDVSQIRSDYKLCKEEKEKLEDYVKEEVERREKLQGEVEQFEIDLAKSKASEEELRFKYRETEIKLNALQDYFKNMESDLHRKLTHEEAARLASETQLETKLREASSAVQDVELYRKQVNELRKEIDETQRAFRSQVATTEERAHDNWLKFRSAERELEEIKRERDALRRRLMDNFTLESPTMHSDSPSSVRTSKRKNSNPPSRVSPLDERKDRTRRKPRDRNSPPSWEPTDTGPPPRRRGREHDTSPPPSWDTHVGPPTRRRDKDRELPPPPSVGPPPRQRGQRESPIGPPNIAELETQRGRRDRHTPSPPAPPQIVDLPPRRRRRDRTSTSSPPPPPPPSLLPPRGIPPTGVPGGVTLAKGGSVNGAPGPRMNVPFETPPPPPSFAGNGRFPGPRTTQSLPNGPSSKFLVKPSTILARHFC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051500 all species →	Family	cTAGE and MIA/OTOR	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23158 all species →	MELANOMA INHIBITORY ACTIVITY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0035459 all species →	Biological Process	vesicle cargo loading	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G212850.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.