Gene detail

Detailed information of Csp0G214680 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00436:253110...315572
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G214680

ATGTACATTAAACAGGTTATTATTCAAGGTTTCCGGAGCTACAGAGATCAGACTGTGATTGAACCATTTAGTCCAAAACATAATGTGATAGTTGGTCGCAATGGCTCTGGGAAAAGCAACTTCTTTTTTGCAATTCAGTTTGTCTTGAGTGATGAGTTTAGTCATATGCGACAAGAAGAAAGACAAGCTTTGTTACATGAAGGAACGGGTCCTCGTGTTATTTCTGCATTTGTGGAGATCATTTTTGATAACTCAGACAACAGACTGCCTATTGACAAAGAAGATGTGTCATTGAGAAGGGTCATTGGGTCAAAAAAGGACCAGTATTTCTTGGACAAAAAGAATGTTACGAAATCAGATGTCATGAACTTGTTAGAAAGTGCAGGCTTCTCCAGAAGCAACCCTTACTACATTGTAAAACAAGGAAAGATTAATCAGTTGGCGACTGCTAAGGATCATGAGAGGTTGAAGCTTCTTCGTGAAGTGGCTGGTACAAGAGTTTATGATGAACGGAAGGAAGAGAGTAAGAACATATTAAATGAAACTGAGAGCAAGAGAGAAAAGATCGAAGAACTTTTAAAATACATTGAAGAACGACTGGAAACACTAGAAGTTGAAATGGAGGAGTGCATTGAATATACTATTCATGAGAAGGAGCTTAGAACAACAAGAGCAAAGTTAGATGATCTTGAATCATCTCGTGAACATGGCTCCCGACAGTCGAATATGCTATACAAGAGCGTGGAGGAAGCTGTTTCCAAAGTGGAGGAAACTACGGATAGCTTAAAGAAGCTGCGAGAAAAGATTGTTGTCCTTAACGAGCAAAAACGACAGCTAGATGAAGACAAAAGAGACCATATTAAGAACAAGACAAAGTTAGAATTGGACATCAAAGACGTTGATGATGCAGTGAGAGAATTTCATTCTTCCAAGACCTCGCATGATACTGAAATTGAAGAGTTGGACAGAAAAATCCAGGAAAAACAACAGAGGCTCGATGCTTTATTACCAGAGTACAATCAACTAAAAGAAAGAGAAGAAGAATACTCAAGAAGCCTGAGACAAAATGAGCAACACAGAGAAGATTTATTCTCGAAACAAGGTCGCAACGTTCAGTTTCCCTCGAGAGAGGCCAGGGATGAGTGGATTAACGGCGAGCTGGGATCATTAGCGGCGTCGATTTCGTCTAAAGAGTCTCAAATACATGGATTGCGGGAAGCTGTGGAGAGATCTGGGAATGATTTACAAAGAATCGAAAATGAAATCAAGGAAAGAAGTGACAATCTGCAGCAAAGAATGCATGATATTGATGAGGCAAACCGGGGCCATTGTGTGCTGAGGAAGGATAGGGACGACGCCACCAACACACGCAAGGAATTGTGGAGAGAAGAGGCTGAAATAGAAGAAACGATTCAAACTTCAACTGAAGACTTAAACAAAAGTGAAAGATGTTTACGCAGTTCTGTCAGTAAGGCAATCCACAATGGCATTGAAAGTGTCAAAACCATCGTTCGTGAGCAGAACATCCAAGGCTATTATGGTCCACTCATTGAGATTTTCACATGCGATTCGAAGTACTATACAGCAGTTGAAGTTACTGCTGGGAACAAACTTTTTCACATGGTGGTTGATTCAGATAGGACCGCCACAGAACTTCTCAAGGTTATGAATAGAAGAAAGATGCCTGGCAGTGCAACATTTATGCCGCTGAACAAGATGAATGCTAGAAGGAGTACTCATGCAGATGCTTCGGAATGTGTTGTTAGCATGATAAATAAACTGAAATATGATGCGATGTATGAGAAAGCCATATTGACTGTTTTTGGTAAAACGCTGATCTGCAGAAATATCGATGTTGCGTCTCAGTACTCCAAGGCAGCCAACTTAGATTGCGTCACAATGGAAGGTGATCAAGTAAGTCGACGTGGAGCACTCACTGGTGGATATTACGATGCTCGGAAATCACGGTTGGATTGTCAAAAATCTATTTTTAAAATACGTGAAGAAATCGCAAAGTTTAAAAGAAAGCAGCAAGAGAAGCGAAATGAACTGGAAAGAGTTGATGGCGTTATCACAGGTGTCCTCGGTGAAATACAGAAATTAGAGACAAAACAAATTGATTTAAAAGAGACATACGAACGACAGAAAGTTGATGTTAAGACCAAACAGAAAGAAAAGCAAAATAAGGAAGAAAGTCTAAAACAGAAGAAACAACTGTTGTCAAAAAAGCAAACAGATTTAGATGCAATGAATGTGTCCCAAAGGTCCCTATCAAGTGAACTAGGTACAGAATTGTTAGCTGACTTAAATGACGAAGATCAGCGAGATGTTGATAGACTAAATGAAGAAACACGACGGCTTCAGGGAAATCTAAGAGATGTGCTGGACCAAAGATCAAGGTTGGAATCTGAAAAGAACAAGTTAGAGAATGTCCTCAACAATAATTTAAGAAAACATCGCGAAAAACTTTTGCAGGAATTGGATGAAATGACATTTGAGGGAAGGGAGCAGCAGCTAGAATCCTTGCGAGAAGAACTGTCACGAAGTGACCAATCATATGTAAAAACAATGCAATTGTTAAAAAAGGTGAACGATAAAGTAAACGAAGTAACTACACTGACAAAAGATAATGATGAGGAATTGGAGATATGGAAGAATAATGAGAAAGAACGACGACTTATGCTTGAAGAGGATTCAAAATCAAAGGAGAAAATGAGCTCGAAACGAAGTTCACTAGTAAAAAAGAAAGACGAATGTGTGAAAAAGATTCGAGAACTGGGTTCCTTACCTGCTGACGCTTTCGAGAAGTACCATACGACTCAAGTGAAGGCGCTCTGGAAGAAATTACAACGCTGCAATGAAGATTTAAAGAAATTTAGTCATGTCAATAAAAAAGCGCTGGATCAATTTGTTAACTTCTCAGAACAAAAGGAAAAACTAATGAAGCGAAAAGAAGAAGTAGACAAAGGGCGTGAGGCAATTTTAGAATTGATGGATGTCTTAGAACAACGGAAACACGAAGCAATTTTGTTCACATTTAAACAGGTGTCGTACAATTTCACGGCTGTATTTAAAGAACTGGTACCACGTGGGAAAGCGAACCTGGTCATGAAAACCGAAGAAGCAGTTACAACGGACGACGAGGGAGAAAGCAGTCAAAGCCAGGCATCATCAAGCAGTCAAAGTCAAAAGTTGCCCTCTGACAGGTTTTCTGGTGTATCTATAAAGGTGTCGTTCACGGGGAAATCTGCAGAAACTAGGGAGATGAACCAATTGTCTGGAGGACAGAAATCCCTTGTTGCGCTTGGCTTGATATTTGCAATACAACGTTGTGATCCAGCTCCGTTCTATTTATTTGATGAAATTGACCAAGCTTTGGATCCCCAGTATAGAACCTCAGTTGCAGAAATGATAAAGAATCAAGCTGAGAAGGCGCAGTTCATCACCACGACATTCAGGCCAGAGTTGCTCGAAGCCTCGGACAAATTTTATGGCGTTCGATTCAGGAATAAAGTGAGTCACATCGACGCGATTTCCAAAGAAGAAGCGAAGGACTTTGTTGAAGATGACGAACAAGGGCGGTAA

Transcript

Csp0G214680

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR024704 all species →	Family	Structural maintenance of chromosomes protein	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR041741 all species →	Domain	Structural maintenance of chromosomes 3, ABC domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0034990 all species →	Cellular Component	mitotic cohesin complex	Interproscan
GO:0061775 all species →	Molecular Function	cohesin loader activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06669	SMC3, CSPG6; structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)	-	Proteoglycans	ko00535	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.