Gene detail

Detailed information of Csp0G214770 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00436:384119...394835
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G214770

ATGTTGGAGATGGCGAAGGAAAAAGACTGGAAGCTTGTTGCCTCACGAGAGAAATACTTGAATAAAGAATATGTGCCAAGCAAAATATTACAATATCTGGATGGTTTCTTAACCGAACAAGACAAGGAGATTATTGTGGCAGATGAACAAAACCATGGAGCCATCCACGCTTCAAGTACACTTGTCTGTCGTTTAAAACGTCGAGGAGAAATGGCATTTTCGTCCTTCGTTACAGCATTAAGGTCAGCTGGATACTTTCACGCGGCTCAACTTTTGGACCCGCATTACGACGTTCACAAATTGGGCATTGAGGCCATAGAGGATGAAGGGGTAGCTGTTGCGGGTGTTGTTGCAGATATAAGGATAGAAGTGTCCCTCACATCTAGTAATGGAGAGCGATTTTTGGATAAAGAGAAGTTTATTTGCAATATTTATAGCAAATCAAAAACTGATGAAACAATAAAGCTCCGGGTCCATTTTATGAAATCACTTTACCAGGAAAATGTTCCAAAATCCTGGATACCGGTTTTTGTAAAAACAACAACATCAAAAACAAACCCGCCTGCACTTGTCTTAATATTTCGCCTTTCTGATGTCAAAGCCGCAGAGAAACTGTGGGATGCCTTCAAGAGCGAAAAGCTCAAGTCGATGATAGAAAAAGGCCTAAAACATTTTGAACAAATTAAAGACGAAGAAGTTGAAGTTACAATACAGAGAAAGTGCTATGACAAAGTCTTGAAAACACTTCATGGTTCAGAACACTCTGTGTTGATAGATGGCGAGGAAAAAAAAGATCTAGTTTTAAGAAAATCTCAACACGAGCCAGCGTTACCGGCATTTGAGAGTAAAAACACGATCCTCTGTGCACCAACAGGGTTTGGCAAGACGTTTGTTGCCATGGCAATTATAAAGGAACATTTACCATCACCGAGAAGAAAGAAGGTTGTTTTTATTGTCAACACTGTTAGTTTGGTACATCAACAACAACAACGTTTAGAGATCTACCTCCCAGAAGATGTTCCTTTGTATGATGTCTTAGAAAGTAATGATGTTGTGGTGTTGACAGCTCAGATTTTGGTGGATGCTCTTAAGAAAGGTGATAACATCACCATTTCATACTTCTCGCTTCTCGTGTTTGATGAATGCCACCACACTAAGGGTAACCATGCATACAATAACATAATGAGGTTCTACACGAAAGATAAACGTGAAAGAAAGTCGCCCAACCTTCCGCAAATACTAGGTCTATCAGCCTCCCTTGGCATTGGCACTAAAAACCCTGGCAATGAAAACATAGCTAGAAATCATGTTTTGGAGATCTGCGCGAACCTTGACGCGGAAATCCTGCAGGTAGCTGAAAGCGACCAGCAGACTACAGTCACAAAACTCATTCCTATATCAAGGAAAGAAATCAGTGACTTCAAAAAAGATATCATCGAAGTCATGGAAGAGATAGAAAGCAAGTTAGATGGCAGCCACGGAAGTGCATCTTGCGAGCGTGGAACCCAACCCTATGAGACTTGGGTGGTCGCGCTTTTCAAAGAGGATCTCGGACGAGACTTTATGACATGCGCAGAACATCTCCGCGAGTACAACAACGCGTTGATGATCAGCGAAGATCTGCGCACGAGAGATGCGCTCAAATATCTCCATGACAACATCAGATCGAAAGGCGAGACTGCCGTAGAGCGCAGGCTGCAACGTCTTTACGAAAGTACCAGGGAAAAGATCCTTTCACGACAATCGGATGCAGAGAGTCATGAGACGAACGCTTGGCTACGAAAACTGGAAGAACTTTTGTTGGAAAAGTTTACCGATAATAAAAACGGCAAATCCAGAGTCATCGTTTTCGTACGAACGCGTTTTGCTGCGGTTGCTTTAGAGGATTGGATGAAAAACTCTACTACACTAAAGACGGTTGTTAAACCGACCCACGTGATTGGCTGTGGTCAAAGAAACGGAAGTGAGGGCATGACAAAGGTGCTGCAAGATGTCCGAATAAAAAGGTTTCGCGATGGCCATGATTGCAACGTCATTGTAGGCACCTCCATGCTCCTTGAGGGCATCGATATCCCAGATTGTGATTTCGTCATCAACTACGGAATGCCTGGCAACGAGATCACCAACGTGCAAGCGCGAGGACGCGTGAGGACCAAAGGGACTTTTGTGATAATCATGGATCATGATAAGTGTATGCTGAAAGAGCGAGATCTTGAAAAAGAAAAACTGATGAAGGTAGTGACTATGAAGATCGCAAGTATGACAACGGAAGAGTTTAAGAAGCAGGTACACCGTCTACAGAAAGACGCGTATGAAGAAGAAGAAGAGTTGCGGAGAGTGGGGGAAGAAAGTAAGCAGGAGCAAAAGCCGCTGGTGGACGGGATAAATTTCCACTGTATGAAATGTGGTGAATTTGCGTGCGAAGTTAAGCACGTGAAAGTTTGTCATAAAGTTCACCATCTTGTCCCAAACCACGTGAAGACAAAAATTAACTTTCACAATGGTTTAATTAAAATCGGAGAAATCTTTTGTGGAAAATGTGATCATCGGTGGGGAATTATGACTAATAATCAACACGGCCAGTTTCCTTGTGTAAAGATTAAGAACTTTCGCGTGAAAGGCAACAGAGATACAGAAGACCAGGTTTTTAAACAATGGAAGGATTTCCCATACGAGATTCAACAGTTTGATCCGAGTGAATTGGAAAACACAGAGGAGAGCGATTCTGTATAG

Transcript

Csp0G214770

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G214770.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.