Gene detail

Detailed information of Csp0G235320 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00460:1356039...1382435
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G235320

ATGGAATCTATTTATGACATCTTTGAAAGTAATATCAAAGAAATTGATGAAGAACCAGATGGTGAAAATGAACAAACACTGGACCATGTACCAGCCAACAAGCAATTGGCAAACTCTGACAGGCCAGGTTTCAATGGTCTGGTGCTTCCCAGGAGTACTCCCGGCGCAACGGCTAATCCGAGCACCTCATTACTCTCCACTGGTAAAGGTGCTATTGATATGTCATCCTACAAACAGAGGGCTATGAGTGCAAGGTGTATTACAAAGATCATTGAGAATGGACCAACATGGGTTGACGACGAGCGAGATTCTGTCAAGGATTTTGGTGGCCCGTACCGGGAACAAGAGGCCAAGTACATGGAGAGAACAAATGAAGCCATTTACAACCGTGCTTCTGAGGAACATATTCGTCAACCCAATCCTTATGAAGAGGAAGACGAAGATTCTGTCAAGAATTTTGGCGGCGACAGTCAGGTGATCAGTCGTTTACCATCTGATGAAAACCTCTGTTTTTCTCCGCCGTGGGTTGAAGAAGAGGATGGTTCACAGAATGCGGTCACGAAAGAATCCGGTAATTATGAAATGGACGAAGTAATTGCCCGAGCAAAGATAAGAGCCGATTTCGGTACCCGATCACAACACTGGCAAGAAGAAGAAGCACTCGATTTCACTAAGAATTTTGCTGCCGAAAGTTCTTTGGAAAACTCCCGTCGTCCATCTTTAGATGATATCTCCCTGACTCCACCTTGGATAGACACCGATAAAGATTCTTCAGTCAAGGATTACGGCGATCAAGAATTGGATAGCAATGTAATTACTACATCAGATACTCCGCACTTGCAGAGCAGTGTTGCTGTGATTCACAATAAACCGAGTGTTGCTAAAGCTCCGTTACCAGGATCCCCGTCGATGCCGTCCGACCCACAAACCGGAAGAAAACCCTTTGATACGAATCATCCCATCCTCAGAACAAATCCCCAGAGAAGAGTGGCTTCCTCGGGACAAAGTTCCAACTGGAACAATGGCCGTGATATAGTCCCTCAACAGAGGATTTACGAAGGTGGTTACCATAACAACCCGGTAGTGAATGCATCTTACTCGTCCAACAACCTTTACCGACCGATGACTGCTAATCCCCGCGCCGCCTTTCCAGAATTGTCTACAAGTATCCAGAATGGCATAGCCCACAATGGACGGGCTCATCAGACCCTTAGACCTTATTACGGGATGCCTATCAACTCAGCTCAATCTAAACCCAACTTAGTGAACGTCAGAACCAACTTGGTACCCAATAAGTCTCCTATGGTACCGCGGTACACTCAGTGTCCCCAGATTCTATCCACGTCCAGTTCGACTACCTATGGCGGCGGCAACATGAGGCCTTCGCATGAGGATAGCTTACGGATGACCTTCCCTCGTCAAGCAATAAACAGCTACGAGGGACTGACTTACAACCAGCCGAGTAACTGGCCATATCAGGTTATGCCTGGAAAACATCCTAACCAGGTGCCCGACAATATTCAAGTCTTCCCAACTGGCTATATTCCACGTCATCGGACGGCGCCAAACTTCAATGCGAACTGTCAGCAGCTTCCAACATCAGATGTACGTCACTACTCAGAGTTACCTGACGAGGACCTGATGGTCGACAGGGACGCTAGTCCCGTGTTGTCCACGCGAAGTGAGAGCCAGTCAAGTCTGGCCGTATACTGCCACACTCCAGATCGCGACAGCCTTGAGACCGCGAGCGTCGTGAGCTTCGCCAGCGGTGCGTCGACGCATCATGACCTGGACTCGAAAATTGACCAGGTGCGTAACCTTCTCGCCGTCATCGACACGCAAGACACCAAAGAGATGGCGCAAACTTTGTTCAGTTTATCGAGCTCGAAGGAGAACTGCCAGGCCATGCGCCAGTCTGGTTGTTTGCCCCTGTTGATTCAACTGCAGCACGAGGACAAGTTGAAGGACTCTCGCATGGGCCACGAGGTTCGCTTGCGAGCCTCGCAGACAATGCGCAACATCATTTCCGCCGGCTTGGAGGATCGAAGGGGCCGCCGGGAACTGAGGGTGTTAAAATTACTCGAAGTTGTGCGCGGCTACTCTTTGGAGTTGCGCTACATTGGAAAATCGCCCAGCAAAGAACGGGCCCTCGAACAGGCGTTGGCAGCAGTCATGAAGCTCTCGTTCGAGGAGGAGCATCGAGCTGCACTCGGAGACCTTGGAGGAGTTGAAGCTATCGGCGAGTTTCTACAACTCAACCACGCTATCAAACGACAAGACACGGTCTCGCCTGGTGCGAGCTTGTGTAAGTACGCCTCCATGACGCTGACCAATATGACATTCGGGAACACGAGGAACAAGAAGATGCTGGGGAACGCACTGGGGATCGTGAAGGCTTTGCTGGGACACTTGACCATGTTGAACGACGAGGATCTGATTCAAGTGTCGGCGAGCGTTTTACGGAACTTATCATGCAAGGCTGACGAGAGAAGTAAAATCGTTTTCCAAGAATGCAACGCCGTTGCGGCACTCGTTGCTGCAGCGCAGAAGGTCAGCGGCGAGTCTGCGCTACGCACAATCTTGTTTGCGGTGTGGAATTTGTCAGCTCACAGCTCTGAGAATAAGACGCAGATCTGTGAGACTCCTGGAGCGCTGACCTTCCTCGTCAAAATGCTCGCCTACAAGAGCATGAGTAATTCTCTTTCTGTGATCGAAAGCAGCGGAGGGATCCTTCGGAACTTGTCGTCGCACGTGGCGGTGAAGCCCGAATATCGCGCGATCTTACGCGAGCAAGGTTGTTTCCAGATATTACTAGCGAACCTGCGCTCGCCGAGTTTGCGCGTTGTGAGCAACGCCTGTGGCATCTTGTGGAACTTGTCTGCGCGCTGTCAAGAAGACCAAGAACTGCTTTGGAAGCTGGGCACTATTTCGTTACTCAAATCTCTTGTCTCCTCCAAGAACAAGTCAATTGCGAAAGGCGCTGGCGCTGCTATAAAGAATCTTCAGAACTTCAAGTCGTCCGCTGCGGTTGTGCAACCACGGGAATCCCCGTCAGAATTTCGAAAACAGAACGGTATCGTACTCGAGGCGGGTTCGCCGTCGCAAGTTCGCGCGAGGGAAAATCGCCTCGAGAGGACGTCGTCGCGGTCACGCGATATGCAGTCGTTGAACAGTTTCACGGGCAGTGCCGACGACGTCACAACCGGCCGGAAAACCGTAAAGGGAAAGGAGAAGTTCAACTCGGTTGACACAGACCCAATGTCTGGTCGAACGAAGGGCGTCCGGTGGATGGACGACAAAACGATCGAGAAACGTTCGGGGAAAGAGACAGTTCGGAAAATGTCGGCTCACGAAAGGAAACGAGTGGAAGATTCATTGGACGAGCAACTGTCGATACTCACTGTCGTTAACGATTCGCGCGCACAATCCGCCAAAGAAAATGAAATGAGGGATGACGTTTCAGGTGCGACGACTGCGGTTGCACAGACCAACTTGGGTGAGAAAAATCGTGGGAACAGGAAGAATGACCGAGCGCACTCGCCGAAAACTAAGAAGAAATCCAACTCGAAGAATAGAAAGCACGCGCCGGAACAAGAACCTGCGGAGATGATTAACCTGTTGTCTGGCCAAGACTCGTTTAAACCTACGAACGTTTTGAATACAGAGGGCTCGGCCAATGTTCGGCGAAATGTTTATTCCGACGCTCAGCGATCAGATGGCCTGGAGATGAATTCGGGTCGGTTGATGATCGGTGGCAAGCAGACTTCGGTCAAGAAGGAGCTTAGCGACGACCATGCAGGTCGCTGTGATACGTTAGTGGATCGATGCGAGGACAGTGAATTACCACCAAGCGAATCCTCTGAAGACGATGCTCTTAGAAGCCCTGTTAGTAGAACTAACGTGAAAAGTGTCCGTGTGAAGTCTGTTGACGATAGTGCTGAGGAAAAGTCAGCGGTCCTAGGAAAGATCGAGCTTCCTCTCCAGCGGTGTCAGTGTCCTGAAGAGGCAGAAGTTTGGGTGAAAAGAAGCAAACGATGCGAACGCTGTCAAAAGAGACGAGTCTCGCATTCGTCGGAGTCGACCAGCGGCTCTAGACGGAGTTCCTACGAGTCTCTCTCCTCGTCCAATCGTCAGCTGAACCGGAATGAACCGGCAACGGACGGACCTGGTTTGGTTACAACTCTGTGA

Transcript

Csp0G235320

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF18797 all species →	APC_rep	Adenomatous polyposis coli (APC) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR041257 all species →	Repeat	Adenomatous polyposis coli (APC) repeat	Interproscan
IPR026818 all species →	Family	Adenomatous polyposis coli (APC) family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12607 all species →	ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0007026 all species →	Biological Process	negative regulation of microtubule depolymerization	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0045295 all species →	Molecular Function	gamma-catenin binding	Interproscan
GO:0045595 all species →	Biological Process	regulation of cell differentiation	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02085	APC; adenomatosis polyposis coli protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.