Gene detail

Detailed information of Csp0G250480 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00476:2566056...2567663
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12901 all species →	SUZ-C	SUZ-C motif	Domain	Interproscan
PF05383 all species →	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR002344 all species →	Family	Lupus La protein	Interproscan
IPR024642 all species →	Domain	SUZ-C domain	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G250480.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.