Gene detail

Detailed information of Csp0G307300 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00576:1464469...1542216
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G307300

ATGCCGAGTGTTATAATTACCGTTTCATTTCTCCTTTTATCGTTTCACGAGGCGTCCATAAAAGGAGAGCGGATAACTGGAACGTCAAAACACTTGTTTGTGCAAAGAAGAGAACCTCTTCGTGGTAGTTCGTTGCCTGTCCATGAAATTCGTCTTTCTAAAAACGGAAGTTCTACTGCCAAATCGCAACAAAGTGTTGATCACAGATCGCCGAGAACTAGGAGAGCAGCTAAGACAAGGAGAGATCCTACTGTAACATCGTATGATTTTGACGATAACCACAATATGTTGTACGTACATTGGAGCGGCTGGAACTACAGCGACACTGTGGTAGTGCTGTCGCGTGATATAATCACACACAGTGGAAGTACAAGCTATTTGTACGTCTCCAATGACTATGGGAAGGTATATACAAATCAGTCGGAAAAGCTTCAATACAAAAATGGAAGTGCTACTCAATATGGACTGATCGAGATGTTTTATACCAGCGCAGTCGATCGAAAAAGGTATATTTTTGCTGATGTCACCCACAACAAGCTTTTTACCTCAATTGATGACTGTATTAATTTTAAAACAGTCAGTTTGAAGTTTAAACCATCAGATATCATCTTTCATCCAACAAATCGGAACGCACTTCTGGCTTATGATGCATCAACAATGAATATTTATTATTCCAATAATTTTGGCTCTACATGGTCCAAACGTGAAGAAAAAGTAGTTTCATATTATTGGGGTTTTGAAAAACTTGAATCGGACAGTATTATATACCTTGAACTAAGCGATGGAAACGTATCTCATATTATCAGAGGACATTATAGTCACCAACATATTAATAAACATGTTATAATTGAAGGAGTTTCTGATTTTGAAATCCAAGATAAATACATGTTTGCCACGAAAGAGACTGACACAGGTCTTGATCTGTATGTCTCTTATCACTATCATAATTTTGAGAAGGCGGAGTTCCCGCTTGATAAACCGAATCAGGATTATTATATCGGCGATACGAGTGAAGGCCAAGTTTTTGTGGCTGTCAACCATAACATCAACACAACGCATTTGTACATATCTGATGTAACTGGAAAGAAGTACGCCTTGTCTTTGGAAAGAGTTCTGTATTATAATCCAGATCACCATCATTCCTGGCTAAGACGTTATATGAAAGAGACGTTTATCGATCTTCACGCGGTTGCTTCAATGAGAGGTGTGTACTTGGCTAGCCAGCTTGCTAGGGGCACTGTTGGTCACAGGGCTATTTATACTATGATTACGTATGATAAGGGAAACCTATGGACTCGTGTACCGGCTCCTGAGTTTCATGCGGATGGCTCAAAGATTAACTGCACTTGGGAGACTTCTTGTTCACTCCACTTGGGTAATACGTTTACTGCACTCCACCCTTACCATCATTACTCTCCTATTAAATCAAAACCTTCTGCTCCAGGATTGATCATTGCTTCTGGGAATCTTGGTTCACGGCTGCATTATCCATCACATGTTTACGTATCTAACAACGCTGGCGAGACGTGGCTTGAGGCACTGGACGGACGTTACTACTTTAACTTTGGAGATCATGGTGGAGTCATTGTAGCTGTTCAACAGTGGTCTCCTACCAACGAATTAATGTACAGCGTTGACGAAGGTGTTACCTGGAATAATTACAACTTTACCGAAAAAGCAATGACAGTGTATGGACTCCTCACAGAACCTGGAGAAAGAACAACTATCTTCACCATATTTGGTTCTTTCAATATATTTGGAATTCACAATTGGGTTGTGATCCAAGTTAATATGACTGACGTTCTCGGTAGAGCCTGTAAAAGTTCGGATTACGAAAAATGGAGCCCTGACAGTCGTGGTTATGGCCATATATGTTTGTTGGGTCAAAAAACTGTGTTTGAACGTCGTAAGCAAAAAAGTGTTTGTTTCAACGGCCACAATTACGATAGACCTATGAACACCACCATCTGTTCTTGCACTTGGAAAGACTTTGAATGTGACGTGGGTTTTATAAGACTGTGGAGATTCGTTTGTATGAGAGATTACCATGCTGGTTTCAACCCTGATGCACCGCCTCGACCATGTAATAAATTCTACAACAAAACCCAAGGACACCGAAAGATTGCTGGCGATAAATGCAAAGGTGGCTTAGAAAGGTGGTTCACGCCACAGAATACATCTTGTCCATTTGACCTTGATCAGGCGTTCCTTTTATACGCTGAACTAGACCATATCCAATACGTGAACCTCACGAACACTGCCGATCGTTCATCCACAATCGTTGGATTGCGTGGAGCTGTCGCGCTTGTATATGATAAAGCGGAAGGATATATTTATTGGGCTGATATGATTGATCACCAGATCAGAAGACAAACGTTAAACGGCTCTGATGAGGCGATAACTATTGCTGGAATCCGTCAGGTGGAAGGCATGGATTTCGACTGGACAACAGGAAATCTTTACTGGGTAGACGCCGGAGTGGGAGTTATTGAAGTTTGCAGAAAAAATGGCCAGTATCGTAAGACTCTTCATTATGATAATTTAGACAAACCTCGAGCTCTTGCTCTGGATCCAGTAAACGGTGTAATGTTTTGGTCTGACTGGGGAACACAAGCAAGAATCGAGATGTCGGACATGGATGGCACAAACAGGACAATTCTTATCAAAAGTAAAATCAAGTGGCCAAATGGATTGGCCGTTGATTTCTTTACACCACGAAATGCTAGGGTGTTCTATTGGACTGACGCAAGTAGGGACGTTATTGAAAAGTATGAAATTTCCAATGGAAAAAGAACCGTTATTGTTAGTGTAAACAACGCGCCTATCGTCAAACATCCTTACTCCATTGCCGTGGATGATTTAAATCTGTACTGGGACGACTGGGCATCAGGAGCCGTGTACAAGTTTACAAAGTCTTTTAAAGGAAAACCAGACGAATTAATCCCGGGATCAGGTTCGAAGTCACCCAAAAGGTTTGAAATGAAAGTGTATTACAAAAACAGCCAACAAGGGACTAGTCATTGCAGTGGCTCTTCGTGCTCCCAATTATGTTTGCCTAAAGCAACTGGCTTCAACTGTACATGTGGCGATGACATGGAACTCATCCCGGGGTCACTTGGAGAATGTCGATGCATAGGAGATCTAACACTGTTAAAAAATGGTACTTGTTTGAGACAAGTTAACAGCACATGTACTCCAGACGAGTTTGCGTGTGGTAATGGAGACTGCATCCCAAGCATGTGGCGATGCGACCACGAAAACGACTGTACTGATTTATCAGATGAGCTATTCTGCAATATGACAGATTGTAACTCTGACGAATTCCGCTGTGCTAGTGGAGTGTGTATTTCACACTCTAATCTATGCGATAGTTACCCTGATTGTGAAGATGGTTCAGATGAGTATAACTGCCGTGCATTTTATTGTGCATACACAACAATGGAATCTTTGACGAGAGATCAAACCACGAAGCCCACGACTAGTTTGACTCACTGCGACTCTGGCCAATTTCGATGCATGGATGGGAAGTGTATTTCTGCAAGTTTGAGATGTAATTCCTATTATAATTGTTATGATCGTTCTGATGAATTTTTCTGTCCAACACGTGGCAAAGCGAACCCAAAAAATATATTATTGGACGCTGATGACGTCACCATCAACAAACGCAAATTGCAAATGGCTGCCAGTCAGTCTAGATTTGCCACGTGA

Transcript

Csp0G307300

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G307300.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.