Gene detail

Detailed information of Csp0G310360 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00591:7900...39284
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Csp0G310360

ATGGCTGTGCAACTACTTCGAATAGTTATCCTTTATTCATTATTACACCTTGCAGAGTTTAGATCCTTTACCATTGATTATGAAAGAGATTGCTTTATGAAGGATGGAGAAGAATTTCGCTATATTTCTGGTAGTTTTCATTATTTCCGTGTGCCAAAATTCTACTGGAAGGACAGATTGTTAAAAATAAAGTCTGCAGGCCTTAATGCAGTGCAAAGGCAAGTACCATACAGAGTCAACAGACACTTTCGTATTTTGATAAGCAATCGATATGCCTGCTACGTAGCATGGAATATCCATGAGCCTTCTCCAGGACTATATAATTTTGATGGAAATGCAGATATCTTAAGTTTTATTCAGTTGGTTAATGATACTGGATTATTATTGATTTTGCGAACAGGTTATATAATTGTTTGGAATATATTTCTTTTTAACAGGATACTTTTATTTTACAAAATAGTGTACATAAGTGCTGTTTCTTCATGGATGAGAGTATTTCTTGAGAAAATCAAACCTTATCTTTATGCTAATGGAGGTCCTATCATTTCATTACAGATTGAGAATGAATACGGTGAATATTTTACCTGTGACCTTGACTACCTTAAGTATTTACAAAATCTGTTTGAAGACATCCTTGGAAAAGATAAAGTCATTCTTTTTACTGTTAACCCAGCCTCTGATCAGGTCATGTCATGTGGTACGATTACTACTCTATTTACCACTGTCGACTTTGGACCAGGTGACAATATTACAGCGTCGTTTAAGTTGCTAAGAAAATATCAACCACATGGTCCTTTGGTAAATACAGAGTTTTACACTGGCTGGTTGGATAATTGGGGCAAGCCTCACGAAACAAGAAAGCCTGAAGTAATTGCGGAATACTTGGACGAAATGTTGAAATTAAAGGCGTCTGTTAATATGTACATGTTTGAAGGAGGAACTAATTTTGGATTTATGAACGGTAAACCACCATTATACCAAGCCCAGCCAACCAGTTATGACTATGACGCGCCGTTATCGGAGGCAGGCGACATAACTGAGAAATTTCATGTTGTACGAAAAGTTATTGGAAAATACTTGCCACTACCACCTGGTCCAATTCCTCCTTCAACACCAAAACATGCCTACGGCAAGGTTCTTCTGACTAAGGTATCTTCTCTTGGAATACTATTGAATGATTTGAAACCACATTCCTGGACTAAATCTAAATACCCTCTGTCAATGGAGGTGCTGGGTTTCTACTATGGTTTTGTCTTGTATAAAACAAGGATTACTTTGCAAGGCAAGGCTACCCTGAACGTATCTGGAATTCGCGATCGAGCTGTGGTGTATTGTAATAAGGTCCGTCAAGGAATCCTTGACCGTAACAACCAAATTCAGTTAATAATAAATGGAGAAGGCTCCGTAAACTTGTCAATAATGGTTGAAAATCAAGGGAGGATCAATGGTGGGTCAAAAATGAACGATCCAAAAGGAATCATTCAAAATGTCACGTTGAACAAAACAAGTTTTGGTAAACTGGGAGATGGCGGCTTTTCAAACCTTGGACGATACTGGCCTGTCGAAGGACCTCAAGTCACTTTGTATGTCCCTGCGTCTGTATTTCGATCGGATGGTGGAACTAACAAGATAACGGTGTTTGAATTAGATGAATCACCTTGTGAATACAGTAGTAATTGTTATGTTGAGTTTACTACTATAACCAATATTGAATGGTACTGTCCCAACCCTGCATAATTAAGTTAAATAATCCTCGCTTGGGCTTTAATAATGTCTTCCTTATGTGATTAGGCGGACAGATGTCATTAATTTATTGTTGTTATGTAATAACATAATAATACAATCTAATTATATAAGTTTTAATAGGATTGGTCATACTCATAACATCAGTCAGAGCTCGTACCTGTAGAATCCTTAATGATATTTGATATAATTTGTTCTTAACAATGAACACACCTCGTGTAGATATAAAATGCTAAATAAAAGTAAATGATCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01301 all species →	Glyco_hydro_35	Glycosyl hydrolases family 35	Domain	Interproscan
PF21317 all species →	BetaGal_ABD_1	Beta-galactosidase, first all-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR019801 all species →	Conserved_site	Glycoside hydrolase, family 35, conserved site	Interproscan
IPR031330 all species →	Domain	Glycoside hydrolase 35, catalytic domain	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR048912 all species →	Domain	Beta-galactosidase 1-like , first all-beta domain	Interproscan
IPR026283 all species →	Family	Beta-galactosidase 1-like	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12309	GLB1, ELNR1; beta-galactosidase	EC:3.2.1.23	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.