Gene detail

Detailed information of Csp0G327210 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00617:1764435...1770673
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19445 all species →	eIF3h_C	C-terminal region of eIF3h	Family	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR045810 all species →	Domain	eIF3h, C-terminal	Interproscan
IPR027524 all species →	Family	Eukaryotic translation initiation factor 3 subunit H	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016282 all species →	Cellular Component	eukaryotic 43S preinitiation complex	Interproscan
GO:0042788 all species →	Cellular Component	obsolete polysomal ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03247	EIF3H; translation initiation factor 3 subunit H	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.