Gene detail

Detailed information of Csp0G333440 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00636:3203521...3241429
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G333440

ATGTCTCACCATGAGAAAAACGAACGAAGACAACAAAATGGTGGCGAACGGAAGGACAATGGTTCAAGTCATAAAGAATTACATCGCACAAACAGTGAAGATCAGGTTCGACGTTTGGTTGAGCAGGAAGGACGAACTGCTAGAAACTTGGTAACTTGGTCTGTTCCTGTCACTGATGAACAACAAGGTGAGATGGTTAATCGTTCTACGAAGACCGTAAACGAGAACAAAACCTCCGAGAAAGGAAAGAACTGTTCCGAGAAAAGACGAACGTCTCCTGGAAAGCCCAAGGCGAGGCAAGCTCGTAGTCGCTCAAACTCGGGAAATAGGAAAAAGATTGATCTTCGTGCTCGTTACTGGTCTTACCTGTTTGATAATCTTAAACGAGCCGTCGATGAGATTTACACTACTTGTGAAACAGATGAGAGTGTGATGGAATGTCAGGAAGTCATCATGATGTTGGACCAATGCAGAAATGATTTCCATGCATTGATTGAACGGATTCAGCTTCAAGCAGCGTTCGAAAAAGCCGACACTAAAGACAGGCCCCAGTCTTTGGCTTGGGCAGTGCGAAAACTATCGCCTGGCAAAAACGTCGCTCCCAGTCCCCCACCAGTGTTTGCTTCCGATGGGACAATCAAAAATGCCGTTCGAAATCTGAATTTTGGAGATGACGCGGACGAAAGCCAGAAGGCCGGGAACGGAGTTATCTCATGGGCTGATAGAGTCAAAGGTAAAACAAGCGTTCCTACTCAAGTACAGATCAAGGGTAAAGTATTACATGAAAATCAGAGCAAGAAATCAGGTTTATCTAACGAGAAAAATGGATTTATTGCGATTGGTGATGAGAACTTAAAAACTGAAGAAGATAGCGAAGGTTGGGAGACTGTATGTTATAGTAAAAAGAACAAATCTCCAGAAAAATTCGAAAGTCTTGTTGGCAATGGTAAGGTGTCGGATTGTGAGTCCAAAAATGGTACTTCTGTAGAGCCAGGGAAACGGGTAGTGACGGGGATTGATGGGACAGTGGTGGATGGTAAAGAAAATATTCCTCCAGGAGGAGATGGAGGATTTGTTGAAGATACAAAACTAGAGGAATTAATGTCTATTGAACAAAAGGAATGTCCTGAGGAAGAGGACCCAATGAAGTCGTTGGAGATAACCTTGGATGATGAGGATCAAAAAGGAGTTTTAAGCCCGCTCAATGGAGACTCGGATGTTGACACTGATGTGGAAGATAGTTTGACGGCATCTGATGTTGAACAACAGAAGGCAATATCAGCGGCCATTGAACAAGAAGCTGATCTTTCCATGGAATACGAGAAAGAAAGAGAACTCTTTTTTGCATCAGCAATAGAGCATGAGGAGAAACTAACAAGGGAAATTGCTGATCAAGAAGCATTTGTTAATGCAATAACGAAAGAGGAAGAAGAGGAAAGTGAATTGCAGGATTTAGAACCTGAGGATGGTGGTGCCATTAAAAGCACAGCGGAAGAGGACAAGGAACTTCGAGAACCCTTAACTAAAGAGTTAACGTGGGAAGCTATGGTAGCTGAGTATGATGAAAAAAATGAAAGAGAAAGCACACCTAACTGGGGAGATCTTGCTGAAATTGCCGATAGCAGAGCCCCTGGGCGTGCTGTTCAAATGCACCAAAAACTATCATCTCCTTCTAGGAAAAGAGATCTTAAAGATGGTATACAAAAACATGTAGAGAAACAGGCGAAAGCTCAGCAACTCAGAGAACAACTCTTGGATGACAAACTCCAACAGTTGCAAACACTTTCAGACAAGGTCGAGAAAGTCCGTCTGCTTAAAATGGTGTTGATCGGTGAGCAGGAGAATCATTTGAGAGAAAAACAGCGGCGAGCTGAAGAGAAAAGAAAAATGACGTTAAAAGAGAAAGTTCGCAAAGCTCAAGAAGAAGAAGCAAAGGTTAACGAAATTGCATTTATCAATTGCTTAGAAGCACAGAATAAGAAAATGGAAGTGTTATCCAGACATCAAGATCACGAAGCGAGGTTACAAGACCTTCAAGAAGAACGACAAAGAAAACGTTTTGAACAACAGGCAAAGGGAACCGCGGCTTATGAAAGAAGAAAACAACTAGAGGCAGAGAGGAAAGCAAGACTTGAAGAAATGAAACAAAAACGACAGGAACAGGAGACGAAATTTTTACGAGAAAAACAAGAGAAAGAAAAAGCGCGGGAAGAAGCTGCCAAAGAGAAAGCAAGAGAAAGAGAGCAGAGACTTGCAGCTAGAAATGAAGCTTTGCAAACTGCAGTGGAACAACTGCAGTTAAAAATTAAACAAAAGCAACAAGAATCAACGAAACGACACGAGCAAATGCTGGATCTTGTAAAAGAGAAGGCTGCTGGAGCATCAAGGCACTCAACTCAAGATGAACTACCTACTGTTACACCATACGAAAGAAAGAAGATTTGTACTTTGTGTAATGTACCGATCGTCTCTGAAGTTTATCTTGTGAGTCATCTTCGTGGAAAGAAACATGTACAAGCTGTTGATGATCTCCAAAATGAAAAGAAAACGGATGATATTGTAAGTGATAAGGAGACATTATCGTTGCAATATATCAAAGATATTTCTGGTGACAGAATGGATGATAATATAAAAGCGAGTGAAGAAAGAAAATCTGCCTTCAAAAAAAGAGCCAAAAAGATTAGAACAAGAATGGCTGCCAGAGGACGAGAATACGAAGGTACACTTAGTGGTGTTTCAAAACCTCAAGATTCAAGCAGAAAGGCTAAACTTCAAAAAGTAATCAAAGATTTAGATCGATATCTGAAGACGCAAAGTACTGGACCTTGGGCTGCAAACAGGGTGGCTGCTCTCGAACGTTCTTTGGGAGAACTTAATCGAATGTTAGGAGGAAAAGTTACCGCTGACCAGGTGACGTTCTGCTATCTTGGAGGCTTGTCGACATTATCCCGGATATTGCTTCTTATTGATATGAACTCTGAAACTCAAAAACTTTTCTTACCGTCGAAAACCTTGTGCACTGTTATTTCAGTAATGACGCTAGCCTGTGCCGAGTGCTCTGAAACGTCTTGGTATATGTTGCTTAGCAACAAATTATCAATTGTTGTTGATCTTTTGGCCTACAACATGACGACATTATGTTGCAGTATTGTTGAAAGGAAAAACAACGAGAAAGAAATTGGACGTATTGGTGACCTGTTCTTGATCTGTCTTCAACGATTGTTATCGACTGTGTTGCACAGTTTAGTAAAACAAGTTAGCAAAGATACGAAATATGTTCCAGCTGGTCTTGACATTCATGTGTGTTCCCAAAGAGTCAACGACCTTATAAGTTACACTGTTTGCACGGGTGTTGTCGATAATCTCCAAACTTGCTTCAGTAGTTTGATTGGACCTTTCGAAAATGATCCAGTGACCGCAAATTTCGTGCTAGAATCTCTGGAAACCTTGGTGGCTATTGCTAGATGTCTTTCGTTAAGGTCAACCCATGTTTTTAATGATAAGCGAGATGATCCAACGCAATTTTTGGTAACTGTTCAACACACTGGACTAGTAGGAATAATAACTTTATTGTACTCTGTGTTACTCAATGATGGACTAAAGGTTTCATCTAAAATACCCGAACAACTGAGCGAAGAAATGGACGGAATGGCAACAAAAGCATTAAGATTTGTAAATTATCTTGCCACAGCTGACTTAACTATTGTACAGAGTACTCTTGGTTGTGAAGGCGTCTCATTACAATTCCGACATATTGCTGGGCATACTTTAAGGGTATGTTCTGCAGAAAGGAATTATGAACTCTTACATGAAGTCATTCTTGTTATTGGCTACTTCACTGTATTGAACCTAGAAAACCAGATCTTTGTTCAATCTGGAAGAGCTCCAACACTTCTCCAAAAGCTCTGTTCTCTTCCTTTTCAGTATTTCAGTAACCCACGATTAAGAAATATATTGTTTCCCACGCTCATTTGTTCGTGTTTTCAAAATGAACAAAATAAAGAGATTGTTGAACAAGAAGTGAGCTGCGCACTTCTAAATAACTATTTAGAGGATCAGAGTTTAGATTTACAACAAGAAACACTGCCTGGTCACTCAGCTCAACAACTTGATGAAATGTCAAAGAGAATGTTGTTATCTCGTCGCTTTCCAGTTAACCATTGGAGAGAAGCCCAAGATTTCCTTCATTCTCTTAATACATAA

Transcript

Csp0G333440

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003397 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF16501 all species →	SCAPER_N	S phase cyclin A-associated protein in the endoplasmic reticulum	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR032446 all species →	Domain	S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31434 all species →	S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for Csp0G333440 in Chrysogorgia sp. JL179-B06.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24869	SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.