Gene detail

Detailed information of Csp0G333540 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00636:3320999...3335179
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G333540

ATGTTGAATAAAGGTCTCAAAGGAAACAGTAACACGTTTTTAAATATTGTCATGGAACTGAAAAAATGTTGCAATCACACGGCTTTAATACGACCTTTAGCAGAAAACGATGGTCTTCAGGCAATTCTTCATGGCAGTGGTAAAGTAATGCTCCTTGATAAGTTGTTATGTCGTTTAAAAGAAACAGGACATCGTGTCTTAATATTTTCTCAGATGGTCAGAATGTTGGACATTCTTGCTGATTATCTCCAACGACGTCACTTCACGTTTCAGAGACTTGATGGGTCTATACGAGGAGAAGTAAGGAAGAAGGCTTTGGATCGTTTCAACGCTGAAGGTTCAGAGGACTTTTGCTTTCTCTTATCAACTCGAGCTGGTGGACTGGGTATTAACTTAGCTACTGCAGATACTGTAGTTATCTTTGATTCAGATTGGAATCCGCAGAATGATCTGCAGGCTCAGGCAAGAGCTCATCGCATTGGACAGAAAAATCAGGTTAATATTTATCGACTGGTGACCAAAGGTAGCGTTGAGGAAGACATTGTGGAAAGAGCGAAAAAGAAGATGGTTTTAGATCATCTTATCATTCAAAGAATGGACACTACAGGAAGAAAGGTTTTGTCCAAAACGAACTCAGCTCCTTCCACAAATACTCCATTTAACAAAGACGAACTATCAGCTATTTTAAAGTTTGGTGCAGAAGATTTATTTAAGGAGGGCGATGGAGAGCAAGATAAAGAATTGCAAGAAATGGATATTGATGAAATTTTGAAACGCGCCGAAACTAGGGAATCTGATAACCAACCTTCAACTATGGGTGAAGAACTTTTATCGCAATTTAAGGTTGCAGATTTTGTTTCAATGGATGTTGAAGAAGAACTCAAAGTTGAAGATAGTGAAGTGAAGGATGAAAACGAGAAAAATTGGGAAGACATAATTCCAGAAACTGAACGTAAAAGTCTAGCAGAGGAAGAAGAACAGCAAAAACAGTTGGAACTTTACTTACCAAGGCGACCCCGAAAATCCGTTAAAAAGATGAATATTGGCCACCCTGGTGAGGAAGATAATAAACGAAAGATTAATAAACGAAAAAGGAGAACCACTAGTTCTTCTGGAGATGATTTCGACGACGATGGTAAGGGTTCAAAGAAGAAACGTGGTCGGCCACGAACTGTGAAAAGAGAAGACATTGAAGGTTTTAGTGATCAAGAAATTAGAAGGTTCATAAAGAGCTATAAGAAATTTGCGCGACCATTGACAAGATTGGACTCGATTGCTATTGATGCAGAACTTGAGGAAAAGTCAAAGGAGGAAATTGCGAAACTTGCGAATGCTCTCCATGATGGTTGTGTCAAGGAAATGAAGGATTACGAGGAAAGGCTAAATCTGGATCCAAATTTCGATGGGAAAAAAAGGGGAGCGTCTCTTCGTCTTTCTGGAGTCAGTGTTAATGCTCCGTCATTGTTGAAACACGAAACCGAGTTAGAACCTTTGGCCGACGCCATACCAACTGACCCCGAAGCAAGAAAAAAATACCGTTTCACGACACCCGCCAAAAGCGTTCACTGGGACGTTGAATGGGAGGTCACAGATGACAGTATGATTCTTGTTGGGATATACGAACATGGTTTAGGAAGCTGGGAAACCATCAAAGCCGATCCAAAATTTTCACTCGCTAAGATACTTCCTCCTGGAAATCTTAAACCACAAGACAAACACCTGCAAACGAGAGTGGAATATCTCATCCGACTTCTTAAACAAGAGGGAATCAGAAACAAAGCTGAGACATTAAGACAGTCATCTGAGAATATTCGGTTAAAAATCAAGAAATTGGAAAAGATGGAAACTGGAAAGAAAAAGATTGTAATAAAAAAGAAAGTAAATGAGAAGAAACCTAAAAAAGTGAAGAAGCCGACAAATCCGGAGTCCGTAGAACCTTCGGTTGTGGTTAAAGGAACCACTCCTCAAGTTACCTCACCGCAGGAATTAGAGAAAGTTAAACAAGAAATTATTCAAGAGGAATCTAAAAATGAGAAAACGGAGGAAAAGCCAAAGAAACCAAAGAAAACGTTAGTGGAAAAGGGGGACACTACGAAAACAAACGTTAACAAGGGACACGATGTGGACGAGAACAAACGTGGGGATACGCCAATAATTGTCGCGGCTGACATGGACCAAGCCACATTTGGAGCATGTAAGGAGAAAATGCGGCCAGTTAAACGGTCGCTGAAATTACTGGAAAACCCGGGAGACACGTTAACAGAAAGTGAACATGTTGAACAAACAAGACAATGCTTACTAAAGATTGGAGATCATATTATGAACATTACGTCATATTATGAAGAGCCAGAAGTAGTCCGCGATTGGCGAAGTACTTTATGGAGCTTCGTCGCAAAGTTTACGGCATTTAATGCGAAAAAATTGTACAAACTTTATAAACACGCTTGTAAAAAAAGAGACGATGGCAAAAAGAAGAAAGAGGACACTTCAAAATCGCCGAAATTAGGTACTCAAAAACGACCAAACGAAATTGGTGCTGGTCACCATGATAGTAAACAAGCGAGGTTATCTGGGAACGCTGGATCGTTGGCTCATTCTACACGTCCGTCTAAAGACTATCACGAGAACTCCTGGAGAGGAGGTACTCGTGATAATACCAGAGAAAGTCCTGGAAACAGACCAACTTGGCGCAACGACCAAAACTATGGTTTATCTCACCACGATCGATATTCGTACGAAAAATCCACGAGGCGAGAGGATCCGAAGAGCCACGATCACAACGATGGTTTCCGAAGTAGAACTAACCAACATCGAGATCAAAGAACACACCATAACGCCAGACCACCTTCGCAGCAACATTTTGGGAGGCCAGACCCTCGAATTATCAAGCATTATCGAGATTTAGACAAACCTGAAGCAAGTATCGTGCACCATGCCGATGTAGATAAACCTGATAATCGCTCAGACTTAGAACATAACCCAAGGTAG

Transcript

Csp0G333540

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13907 all species →	CHD1-like_C	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal	Domain	Interproscan
PF18375 all species →	CDH1_2_SANT_HL1	CDH1/2 SANT-Helical linker 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025260 all species →	Domain	Chromodomain-helicase-DNA-binding protein 1-like, C-terminal domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR040793 all species →	Domain	CDH1/2, SANT-Helical linker 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034728 all species →	Biological Process	nucleosome organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G333540.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.