Gene detail

Detailed information of Csp0G343120 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00644:634706...654526
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G343120

ATGTCAGAATATGGCGTAGAAACATCGAGATGGCACCATGGTAGCGATAATAATCGCAACAGCGATCGGCTCGCAAGAAATCGGATTGATGACAAGCAAGAGACGCACGTTCAAGCTTTTAATGGGACGAAATTATCTAACGACAGCTCTGGTGTCTCGAAGGAACAAGAAGAAAAATATTATCAGTATTTGCTGAGGAAAAGTTCGTCGAAAAGGAAATCGGATTCGGACCGAATTTCAGGTTCAGAAGCAAACGGAAATGAAGATGTAGCAACTAGCTTACAGCGACCGTCGCTCGGTCGGACGAATAATGTTCCCGACCGGCCCTCCTACTTCGTTTCAGGGCAAGAAAAGCAAACAAACCATGAGTCGTCGAGTTATCACAGTAATGTGTACGCAAATAAAAGAGGACGAGATTTGAATCAGGAAAGGAAATCCAGTCTGGGAGCTCCTGCTGCGGTTGACCACAGACATACGGAGGAGAGAAGGCCGAGGGTGAAAGATTTACGTAGTCTTTTCGACAACGGTACGAGTAAGGAGGATAATAGAACAGTAGAAGTCCGAGGTAGGGATGAGAATGTTGTGAGAGAGATTAGCAACAACAGGCGTTCCGCGGTCGCTCACGGTAGCAATGTTGATCAAGCCACGTCAAAAGTTTTAGTCAACAACAAAGAGCTTGTCAAAACAAATAAGAGCAAAAGTAGCGAATTGTTTTCGAGCGAGAAAGCACCCGTCGACGTTGGGAGAAGTATTTCTACGAATAATGGAGAAGTTGAACCCATCGAGAGATTGCGCGTCTCCTCTGACCCAGGGGGTAAGCGGTCCGGGGGGGGTAGGCCAGCGTCGCCTGCAGGCTCCTCGCAAGGCCTTGCATTGAAAATGCCCATTAAATTGTCCAAAGAAGAGGCCAAGGATGCATGGCGGTTAAGTCTTCAGGCCAACAAGCCGAGAGAGGAGAGTTCAAGTGATGACGATGATTCCGATTCCGGCCAAGACTCTCAAGGTGAAGCTGTGCGGGTTTTGGATGAATCTCGGCAACGGATTAGTGACAAGCATGTCATACAAATGCTGCAGAAAAGACAGCCTGGGGAACTTAAAAAGATGTTTGATAGTGAGGAGGCATTTGATGCGACAACTAGAAGGCAATCGTTTCACGGGTCTTATGACAATGAAGCTGACAATGACCGTTCAATTTCTCCAAATATAATGGATCTTAATGCAGACAATTATGAGAATGGTCATAATGAACTGGAAAAAGGATTGCCTGACAGATATGTTGAAACCGGACCAACGGACACAGGTCATATTGTAGCAAAAGGTGACATTGATGTATCTCGGTTTGTTGCGGATCCATCTTCGCAAAAGGTGATTGAAACAAGTGTGATAAAGCAGGAAGAAGCGGCTGTGCAGGAGAGTGTTTTGGATGACAGTAGTGATGCACAGGCATCAACCTATAAGTCGATGTATAAGGATTTCCTAAAGAAGGAAGGAATTGAAAATGTTGGGAGCCCATCTCCTCCCAAAGCCACATATAAATACACCAAAGAAACATATAAATCACAGCTCACTTCAGATGAAAGTGAAGCTGAGAGTGAGACTGTGGGTGACAATGATACCAAAAGAACTGTTGTCACTGACTTTGCCATTAATAACAATGACAATGTTGAATTAGTAGATGCTAAGCCTGAATCTTTGCAGAGAACAAGTAGCACTGATAGCTCCAATGCTGGTGCTGACGCATTTGAAAATATGATGCCAAAAGAGTATGATGACGAAACTCAGGATGATGAACCTATCACGCACGACTCATCCTCAGCTTATGAGGAAAGTGATGCTGGCAGTTTAGCCTCGCCTGAATCAAAATCCAATTTCCAGTTCAATTTTGTGCTTACGCATCAAGACGATCTGAAAGGAACAGTTGAACCACCTGTACCCAAAGAAGTGACGAAAAAACGTGGAGTTAGGTTTTCTGTGGCACCGCACGATGTGCAGGAGACATATCATCCGTTGGATTATGAGAGAGGGAATGATGACATTGATCCAGTGAGTTCATCTGCTGAATGGGAGCTGGAGAAACGGGTGGATAAAATGGATGTGTTTTCTGTTGATTTAGATAAAGGAGATCAAAGAGGACTGGGTCTTAGTATTGTTGGTCTTGGCGTAGGGACAGATTCTGGAGTGGAAAAACTTGGTATATTTGTCAAGTCACTCACTCTTGGAGGAGCTGCTGAAGGTGATGGCAGAATCCAAGTCAATGATCAAATCCTGGAAGTTGATGATATTTCGTTGGTTGGTGTCTCCCAGGTGTTTGCTGCTCAGACATTGAAAAGTACCAAAGGCACTGTAAGGTTTCTTATGGGAAGAGAGAAAGGTAGACACAATACCAATAAGGGAAACGTTGATGACTACCAAGCAATGTGTGAGCATTTGGAGGATGAACTGGCAAAAGCAAAGCAGCATATTATCAATCTCAAAGCTGATTCACTTGTTGAGAAGGTCACCGCAGGTGATGATACCGATGAAGACGTGGCGGCGAGGGGTTTGGAAAGAAAAGTGCGAACGCTTCAGGATAAATTAGACAGGTCTGAAGAGAGTCTGAATGTGGCCGATCGTGAACACAAGGCGCTTCTTGATCAGCTAAACGAAAGCAAGAAATTGTACGCCATGGTGCAAAGAAAGAATGCTATTCTCAAAGAACAAATGGGGAAAACCTCGACAAGATTCCTTGAAAGTTTAGGTCCGACACCGTACCTTTTGGTCCAATGGCTATTGGTACGCGATCATGAAAGCGAGGATGACCAGAACATATTTGATCAGTATCTCAAACCAACTCAGGTGGCAACAGACTCTGACGCCAACCAAGGGTTGAGCCACGATGACAGTGACAGCGAAGAGGCGACAAGAGAACATGCAGATAAGCATGCTAATTTGAGCGATGTTATAGCACAAACTGGTGTACTTGATAACAAAATGCAACATGACAAGAGGCAGGTTGCTTACGACCCGAAAAAACGAAGGCCTTCTCGTGAACTCATTCACAACTTAGGCAAGAACTTGGATGCCGATCAAGAAGCAGAGATCATGAATAAGTCCGTGGATGATTTGGTTGAAAAAGTACGCCAGTACGCCGAGACGGATCCGACGGAGGACCCGAAGCCTAAGCGACCTCTCACGGGTTATTACGCCGATCCTTCGGGTATGATTGAAGCGAAATCTCGAGTCCGACCACTGCACAAGACAGCAGGCAATCGTGAGAGGATGATCAAGAATGCGTTAGAGGAGCGCCGTAACAGTGCGAAGGAAGAAAGCAACGACGTACATAGCGTGACGTCGAGGACTTTGGAGGATCAGAGTGTAGCCGAGGAGTTACGCCAACGCGATTTGATGGTGAAGAGCTTGAAAAAAAATAACAGTCGAACTGTACCTAAACATAACAACACCGCGTTACCACCTATCTACTCAAAACAAGGCTCGTTTTTTTCAGCTGTCTCGCCATCTAGTTCGACTGATGAGGTAATGAGTGGAAAAAGTTCGCTTGAAGCAGTAAGCTCTGGTTCTTTGCATGATGAAAGCAATAAACCTATGGTGGCCGAGTGGAAAAATATCCCTCTGGGTGAATGGGATACTAACCAGGTTAGCTATTGGTTGATGTCTATCGAGCTGGAAGAATATTCAGATACATTTTCAAAAAACAACGTTGACGGCAACGCGTTGATTTCCATGGATACCAACAAAATAAAGGCTCTTGGAGTACACCATAAACACCAAAAAACGTTAAAGAAAAGGATCAAAGAACTTAAGAGTGAGCTAGAAAAGAAAGAGAAAAGGACGAAAGGCAAAAAGGGAGCGCCGAAGTCGAAGAAGGTCCCCTTTTGGAAAGGAAAGTATAATGTTTCCCAACAGTAA

Transcript

Csp0G343120

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF17817 all species →	PDZ_5	PDZ domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR040645 all species →	Domain	Neurabin-1/2, PDZ domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR043446 all species →	Family	Neurabin-like family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16154 all species →	NEURABIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0014069 all species →	Cellular Component	postsynaptic density	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0019722 all species →	Biological Process	calcium-mediated signaling	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17551	PPP1R9; neurabin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.