Gene detail

Detailed information of Csp0G344600 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00647:282558...328024
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G344600

ATGATCAAACTTGCAGCTTTAAACGAAGATTGGAGTGATGAAAGTGAATCTGAATCTACAGAAGGCATAATTAAGGAGGCTAGGGAAGCAGAAGCTCTTGAGTTGTATAATAAAGCCTTACAATATCAGCAACTAGGTGATCATGAAAGTGCTAAAGAATATTATGAGAAGTTATTGAGTGCATCTTTTGTTACAGATGTTTGTGAGAAAGACAAAGGTGAAGTTCCTAAAAGTCATCCTGCATTGGTCTTTAAATATTCAGCTTATAAAAATTTAGCCAGTCTTGCTGAGGAGAAGTCAGACTTGGATAAAGCTATAGATTTATATCTTGAGGCTGCAGCTATAGATGATTCTGATGTCACTTTATGGTATAAAATTGGAAAAATTGCTGTTAAACTGGCTAACGTGAGATTAGCTCGATATGCATTTGAACAAGGATTGAACTGCAATTCCAAGCACTGGCCTTGCCTTGATGAGCTAATTGCAGTTCTTTATGCAATTGGTGATTATCATGCTTGTTTACTCATGGTGTCAAGTGCATTTGAAAGAGATGCATCTTATCCCAAAGGCTTAGTTGTGAGAGATAAAATCTACAGTGAATATCCTAGTTTTAGAAATGAATTTCAATATATTTTTAAGGAAGCCTTGGATCTTCGCAAGAGAAATAGTCAAAGAAATGTGAATGTAGAGACACCTCCAATTGTTCCAGGAAAACATTTGGCAATTTATACTTGGAGTTCTTTGGGAAATTGTCTTGTTGCATTATGTGATCAAGTTACATCAAATGAAAACTCACAGACCTTGTGTGAGAAAGTTAACCTAGCATGTTACTGCAAAATTATAATAACTCCTGAAAGTGATGATAAAAGATCTTCAAATACATGTATTAGTGTTAAGAGAAAAAAGTCTGTAACTATGGAAAATGATCAATTCAGTGCCCCAAAAAGAAGATCTGCTCGGGTGAGCAAAAGCAAAAAGAAGCAAGAAGAGATAAATTACCAGGACATCCTACAAGATTTTCTTCCAAAGATGTTGAGGATAGGTTATTTGAATGAAGCTAATGAAGATTCAGAAAGTATGAAGCCAGATTTTCAAGATGACAGGTATGAAAATGCTGGAGTCATTTCTATTCAAGGGATGAGTTCTTCAATGGATTGTAATATTCCAAGTAATATTCCAGCCATCTCAAGTGAAAATGAACCATTAGATGTGCAAACATTTGTCAAAAAACAAATGGATAACTGGTCTGTCTCACTAATTGATGTCTTTTTAAAGATATACTCTAACATACGACCTCATCTGTCATTTCCACCATTGCTTTGTGACGAAATACTGACGTTTCGAGCTCTTATTCTCCTTGCTATCGAACTGACGCTAGATAGATGGTGTACAGAAAAGTCCAAGTCTTCATCTAGCTTGTCTCCTGCAGGATCACCTCGAGCTCATTCAGCTAGAATGTCACCTCTAAAGCACGATCCAAAATTCCATGGCAAATATTTTTTAAACGACTTGGAGTATATTGCACAGACTGCAGGGGCAGCGAGTAGTCTGTTGGAAGATGATTGGATAGAATTTGCATTACGAGTAAACTGGGCAAAAGTTCGTTTCATGATGTTCCAAGGGAAGATGGATTTGGCAGTGATATACTTAGATCGATGCAAAACGTTAATTGAGCTCAGTGAGACGCCTATAACGATTCATCTTGTTAACTGTAAAGCGGACAACATAATCACAGTTGGTCAGGTTAGAAAGAAATTAGAATCTCTACAACGATGTCGGTCTTTGGAAGAGGTTCATCGTTTATATGAGTTAGAGCAGTATCAAGAAGTTGTAGATGTTCTACTTAGCTCTCTTCACCAACCTCCAGCTGTTACTAAGGCTGATAATGGTGGTATGTCTATTCCAGAACGACCTGCTCAGCTATTACTTCTACAAGATTCGTTACTAAAACTGAAAAAATATAAGATATGCTTGTTGTGTGCTGAAGTAGCTTTTAACGAGGCTGTTGGTCAAATGACCCCTTGTGAAGCTTGGTCAACAACATTGGAACGACTTTTTCAATGTATTAATACTATTCTAAGCATGGATTCAACTATGTTGGATAGCCTTCCTGTCGACAAAATGCAACGGCTGACGCAGAATGTAATTAAGGTCATTGATGTTTCAATGGATTCAACAGAAAATGCATCAGAAGTTCCCTTGGCAACCGTTATGCCATGGTTAATTTTATACCGCATTATCCGAAGTAAAGAGGATGAAAATGAATGTGAAGTCATGGAAGTGAATGAAAAACCGTTAATTGCGCCAATTCCTGAAGCTGACAAATCTGAAACAAGTAGTCAAAATACTCCCGTTGCTGTTGTTCAAGTTGGACTTCCATTATCTTTGCAGTTTCTTCGTCTTGGACATGAAGCACTTGGAGGCCGTTCATGGTGCATCAGTAACGATGGATTGTTCTTACTTCTTTATGTTGATGTTTTTCTAAAATCTCTGAAAGATAATTCACTTCGTATGCAACAAAATCGAGATAAGTTAGTACAGGAATTAGAACAATGTTTCTTTTGTCTTTATGGTCATCCTACCAAGAAAGCAAAGGCAAGAGGATTACAAGAACATGGATCTACACAAATCCCGCTTACCTGGTCTAATTCCGCTGTTGTGTTTGAGTTTTTTAAACCACCAACTTTGCCAACCTTTGAAGACAAGACTTACACAGTGACAAGTGAGGTTCAAAATTTGTTGAGAAGAATTACTGTGGTTGTGCCACAATCTGAACTTCAAGCAATTACAGTTGAATCCGTTCAGAACTTTATTGATGGGACCTCTGACCAAATTCCTACACTTCCTCAACATTTGCAAGAAGTGGAAAGGCCAGTTATTTGTGAAATATTCTATCTTTTGGCGGATTCATATTTCAAGAACAAAGAATTCAGTAAAGCCATTAAATTTTATATCCATGATATCTGCTCTAACCCAGACCGCTTTGATACCTGGGCTGCAATGGCTTTAGCAAGACAAGTACGCCTAGAAGATAAATTACGTGCCTGTGAGCCAAAAAGTGAAGGGCCTATTAAAAAGCATTCTATTTCAACTCTAAGGTGTTTCAAAAGAGCTCTTGAAATTAATAAATCAAACACAAACCTTTGGGAAGAGTATGGTTCACTCTCGTACTGTTTGCATTCTTATGCTTCAAGGCAACTGAATCAGGTTGAACCTCCGAATCCAGAGAACCAAAAAGTTGTTGATAAAAGAAGAAAAGACATGCTCATTCAGGCCCAGAATTGTTTTAACGAAGCTCTTCATAAAGCAGATAATGATGAACCATGGCTTCAATGTTATATGCTTGGAAAGATTGCGGAGAAATTGTGTGAGCCACCAGAGGAATATTTGGAGTTCTACTTAATGGCTTTCAGAGAATTAGACAAAGATGGCGCTGAATATCCAAGAAAAATTGGGTATCATAATCCACCCAACCTAGCGTTAGAAGCCTTAGAGGTGGCTTTTCGTTTCCACACGTCTGTGTTAAAGTTGCTGTTGAAACCAAACACAACAACAAACTACAAAACATTAGAAGATTATCTAGACCAAGCTTCGCGATGTCCTTTTTATCAACCGAACTCGAAAGTGCTGAAAGATGATGACCAAGGTTTGTATATTAAGGGAGTTACTGTTGGAGAGAAAAAGGAAACCGTTGAAGATGGATTAAAACCTAAAGAGATAGTTGATGAAGATTTTCAAACTGAGATGGCAAGAACGAGTGATGAGTCTAACATACTTGAAGATCGTAATCACGTTGTTGGAACTAATGATGCTAAGACAGATTTTCAACACGAACAAAACGAAAGTCGTCCAACGAACTTTGACGCGTCTTGTGATTCAAATAAGGATATTACTAAAGTTTTACCCGAGGAAAAGAAGACTGAAGTTGATGAAGTAGAAAAGACTGAATGTGGAGGTGAATTACAGCAGAGGATAAGCAATAGTGATGATGAGAAATCAAAATACAATAAAGATATTGCTTTGAAGTTAATACATATATGTATTGAAGCATTAGCGTATGGGTTACAACGATTTCCTCAACACTATAAATCTCAATATCGCTTGGCTCATGCATATCTACATATCCCATCGTATAAGAATGCAAGTCTTAGTCGTGATCTTCTGCTTGGCAGCAATATTATTGGAGAAAAACCTTTTAATATTTCTGTCCAAGGATTATTTAATGAAAAAAGCAAAACCAATCTGTTCCAGGGAATTTGGCGGATACCTCTTGACGATGTTGACAGACCTGGTAGTTTTTGTACCCACATGTACAAGGCTGTAAAACTTTTGGTTGACGTTTTGAATGAGCTTCATGAATGGGATTCTCTTCTGCTTGTTTCGTCTCTGATGTATCGTAGCCCTGATACTGGAAAAAAATATTTACGAGACAATGAACGCTTGCTGTTGGCTTCGAAGGCTTTTAAGTTATCATTGAAGCTGCTTGGTAATCGTCTGGACGAATGTAAAAAGTTATCCGATTCATGTTTACCTGCAACCACTGATTTACTAACAGATGTTTATGAAGCGTACAAATCTTCTCAAAAATTACAGGAATATGTTGAGGGTGAAATTGATGCATCTCTTCTGGACGAAGCTCTAAAATGTTTTCAACAGCAGTCAAAGACACAGTTGTCAAGCAGTGAAAATGAAGAAAAGTCGTCCACGTCTAAAACAGTCAACTGTGTTTCAACAGAAGAGGAAATGATGTCTACCCTCAGTGACCGAGAATTAGACGCTCTGAAGGATGCTATTGACTTATACGACACTGTTGGCGATGGAAAAGTGGATTCGATGTGCCTAGCAGACGTTCTGCGAGGAATTGGCGAAAACCCTACCGAAAGTGACGTGCAGAAATTTATAAAGCAAGTCGATCCTGTGGGAAATAAAAGGGTGTCATTTGAAGAATTGATTCCAATTGCCCTGTCTTGTAAGCAGAGAGCACGAAAAGTTCAGGCCCAGGAATTTATTGATTGTTTAAGAGTATTTGATCGAGACGGCTCTGGCAATATAAGCAGTGCAGAATTACGACAAGTGTTGACAACCTTGGGAGACAAGTTGTCCACAGATGATGTAGATATGCTTACAGCTGGACTAGAGCACAAAGGACAAGTCAACTACGAAGATTTCGTGAGAAATGTAATATCTGCATAA

Transcript

Csp0G344600

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR033053 all species →	Family	Histone transcription regulator 3/CABIN1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15502 all species →	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17613	CABIN1; calcineurin-binding protein cabin-1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.