Gene detail

Detailed information of Csp0G353640 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00651:9439779...9458328
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18265 all species →	Nas2_N	Nas2 N_terminal domain	Domain	Interproscan
PF17820 all species →	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040815 all species →	Domain	Nas2, N-terminal	Interproscan
IPR041489 all species →	Domain	PDZ domain 6	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR035269 all species →	Family	26S Proteasome non-ATPase regulatory subunit 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12651 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070682 all species →	Biological Process	proteasome regulatory particle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06693	PSMD9, RPN4; 26S proteasome regulatory subunit N4	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.