Gene detail

Detailed information of Csp0G354450 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00651:10623371...10669832
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G354450

ATGGTTTCTCAAAATGATTCGCCATTGCAGCGATATCAGCCACCAGTAAAGATAACAATCAAAGATGGAAGAAAGCCAGCTGAGGTGTACCGTACTGATTTAATTACAGCCATGAAAATTCCAGACCACCAGCTCGTACTATCCGGTTCATACTTTAATCTTACTGATGCGTGGAAACAAGATTGGGAAAAAGGCGTTCAGGTTCCTGTTAATATGGATTCTCTGCCACAACCATCTTTTAGGCCGAACAAGTTCATAAAGAATCAGACGACAGAAGAAAAGAAGTTGGAAAAACTCGTCTCGTATGACCTGGATGATGAAGATGTCGAATGGCTGAAAGGATTAAACCGATCGAGGAGAAATAAAGGTAACAGCATTAAAGGATTTCCTCTAGATTTAATTATTGCGGGCGCAAAATCACTGTTACACCAATATGGAGAGACCATTGCCACTGCAAAGGGATTGAGTATTGAATACGATGAAGATATAGCTTGTGATGTTTGTCGAGCGCCTGATTGTGAAGATGGTAATGAAATCGTTTTCTGTGATATGTGTGACGTAGCTGTTCACCAGGCCTGTTACGGGGTACGGGAAGTGCCTGTTGGGAGCTGGGTCTGTAAACCTTGTGCCCAGATGTTATCCAACTGTCCTTGTTTGCTGTGCTCTACCACGGGGGGTGCAATGAAGAGAACGAAATCGAAAGGTATTCGAGGTTGGGTTCACATGAGTTGTGCTTTGTGGATACCGGAGGTAGGGATAGGCGATGTCGAGAAAATGGAACCAATTACAAGAATTGAAACCATCACACCTGGTAGATGGAATCTGTTGTGTTATTTATGTAAAGAGAAAAAAGGAGCATGTATACAATGTTCGGTTAAAACCTGCGTTACAGCTTTTCACGTCACCTGTGGATTCAATAACAAGTTAGAAATGCAAACTGTATTGGATGAGTCTGCACCAGACGGAGTTCGACATGTGTGTTACTGCTACAAACATGGCTCAAAAAAGCCCGGTAGATCACCTCGTAAATCTTCCAGTGGCACTCCACGCAAGGGCTCTCATCAATCTTCTTCGCCACCATCTAAATCATCTTCGGCTGCGACAGCAAAACAACAGGAGGAACAAGAAAACTTTCGACAAAAGAAGTTACGTAGAATGGAAGAAGAATTCTACAAATTTGTTGACGCCAAGGAACTCGCAAACGAGCTTCAAATCAGCACAGAGCTGGCAAAGACGTTTCATCGTTTTTGGACGTTGAAAAGAAAGGCGAGAGACGACGCCTCATTGCTTCCTCCCACCGCTGAACAACAGGAACGCTTAACCGGTAGACAGACTAAACCTTATGAACGGGCATCCATGGAGATGGAAAGAGTCATAAGATTTCGTCAAGATCTTGAAAGGGTGCGCAACCTGTGTTACATGGTGGAGAAACGAGAAAAACAAAAGAGAGAGCTTACAAGAGCACGCGAAAGTGTCTTTAGAAAAGAGTTAGAAATCGTCGAGGACTCGTCGATGTCATGCGACGACGTCCGATGGGCACGCTCGTGTTGCTCGAAAAACTTCACGGAATACGAGACGTTGCAAACACTTGATTTGCACCTCCCTCGGAAGCCAAAGACTCACAAGAGACATACGAAAAAGCGGAGACGGAGAGTTATGCAGAATAATGTTTTCAGCTCTACTGTGGAAGAAGTGTTTAACACACCAGGAGAGGAGACCCCCTGTGCGGGGAAGGAAGGCGCTATAGAACGCGAAAATGACAGCTATTATAGTGAACAGTGTGAAAGCGGTTGCATGTCGTTTAGCTCTAACGTCGAGGAAAGCCTGAGTGGTGTGAGCAATGCACGAAGGACCAGTATTAAAACCAGTGTTTCGTCGAGCGAACCTGCATCGAATGAGGATCGCGATGTGAAGGAAGGAATGCGCGAAACTTGTTTTGCAAGCTCGCGGCGTAGTTCGAAACGTCTTGAGGAGTTCTCGTCCGACTCTGATTTCGAAGACGAGTCGTTTCGAAATGCTCGTTCGGCCTGCAGGAGAAGAATCGTGCCTTTAAAATTGCCGAGGAAAGCTCAACAGAAGAACGGCATTATGGGTTGTAGTGATGTTACAAGCAGCTCGCCAGGCGAGACTGACAGATTGGTGAACTGTGTTCGTATTGAACGACCTAGTGAAGGATGCCTGGGTTTGGTGGAAGTGAATAATTTAAAAACGGTGGACGGAATCAATGATATGGTTCTACGTAGTCCTAAAAGGGTCATCAGTCCGAAAATTAATATGAAGCGGAATAGGTTCTTTGAGGAGTTCTCTCGAAATATAGATGACTGTGGTTCTCCAAAAAACGAAGAAAGGATCATGCGATCGAGCCGCACTGTCCTAGACGGTCAAATGGTTCTTGACAAGTTCAACATTCTGCTATCTCCGAAGCGGTATTGTCGCCGAAACGGCGTCGTTCGTAACCCGAAGAACGACGAGAATGCCGACCAGAATCGGAGCTTGGCGGAGCACGACGAAGATCCCATGATTAATGCCGAGGTGTCGTCTCGAACTAGATCTCGTCGTTCGGACAGCAGCCCACCACCTTCCGCGTCCCCGACCAGAACAGATGGCACATTATTATCTAAGGGTGGCACGACCGACCGTAACAGCGGGTCGAACTGTAAACCGTGTGCCGTTGCAATCAAGGAATCGTTGGTCGACCGGTGTAGAACGCGTCGATCGCCCACACAATCGCCTTCGTCAAAAGACGCGTCGTCTTTCGGCAACTCTGCGCAATGCTCGAGATTTTTCGGAAAGTTTCGCCAAACTGCCACAACTAGCGCGTAG

Transcript

Csp0G354450

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF10513 all species →	EPL1	Enhancer of polycomb-like	Family	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019542 all species →	Domain	Enhancer of polycomb-like, N-terminal	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22156	JADE3; protein Jade-3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.