Gene detail

Detailed information of Csp0G401720 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00750:733671...754673
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G401720

ATGCCGGCTACATTGCTCGACTTCTTCAAGAAGATCCCGTGTAAAAAAGCGGAAAAAAGGTCTCCAGTGGCAGGTGATACTCCAGCAAGATGTGAAAGCAACTCACCCAAGGAAGCAGCCAGGAGTTTTGCGTCCGAGAATGGTAAAACAAATGGAAATATCGAGAAGTCATCGAGGCACAAAGTGGACGAACCAAGCAATCGAGAGTCTGGTCGTAAACGAATGTATGGCTCAGATGAAGACGAGAAGAGCGATCAGGATGAAGTCACTGGCAGAAAGTTCAATAGCAAGAGACCACGTCGAAAGGCAACATCTAAATCAATCAAGCCTGCACGAAAGAAGCAAAAAGCAACGTTAGATTCTGATTCTGAAGAAGAAATCGTAGACGTAGAGTCCGATAATGAATATAATCCTCCACAAGTGTCTAGTTCTGATGATAACTGCAGCAACGGTGTTGAAGAAGAAGGGAGTGAAAAAGAAGAAATGGAAAATGATACGGCTTCCAAAAAGAGGAAAAGAGGTGGTAAACCAACGGCCCCACCACCCAAATTACCAAGCACACCATCCTCTTCATCCAGGCCGTCTTCATCATCGACACCTACTAGTCTCCTTTCACCATCTCTTACCAATAAACTGGCAAGCAGTGTTGGCAAAGCAATGTCGACATTGTCCAGATTTCAAGTGTCAACATCATCGCCGACATCGGATAAAAACAATGCTAATGAAGGAAATGTTTATACCCACGAGAAACTAGTGTGGTTGCGGGAAGAGAAATTAAGGGACAAGCAAGGAATCTATTTTAATCAGCCTGACTATGATCCAAGGACTCTCTATGTCCCATCATCGTATATCAATTCCAAAGAAGTTACTCCCGGCATGAGACAATGGTGGAATATCAAAAGTGATAACTTTGATACTGTGCTGTTCTTCAAGGTTGGTAAGTTTTATGAGCTTTACCACATGGATGCTGTTACTGCTGTGAAAGAGCTGGGATTAATTTACATGAAGGGAAAATTTGCCCATGCTGGATTCCCTGAGATTTCATATGGTCGATACTCGGACATGCTCATCCAGAAAGGCTACAAAGTTGCTCGTGTAGAACAAACTGAAACACCTCAGATGATGAATAATCGTAAGTTTTGTGGAAAAGGTGACAAGGTTGTGAGACGAGAAGTTTGTGCAATCACAACAAAAGCAACCAAAATGTTTAGATCCAATGAAGGTGACATGGCTGATGACTCTGCAGCTTACTTATTGGCCATTAAAGAAATGGGATTTGATGAGATGTGTGGAGGTGAAAGTAATTACGGAGTGTGCTTCGTTGACACATCTATTGGAAAGTTCCATGTTGGGCAGTTTTCAGATGACAGACAGTGTTCCAGACTTAGAACCCTCATAGCTAATTATGTCCCTGCTCAGATTCTGTTTGAGAGGGGTGCCCTGACAAAGAAAACACAATCCGTACTTCAACATGAAATGGTGTCTACAATAAAAGAGCAATTATCTCCTGGTACTGAATTTTGGGATGCTTCAAAGACCTTGAAATTTCTGCAAGAGTCGCAGTACTTTGTTGATGAAAATTCACCGACATGGCCAGAAACTTTGAAAGAAATGACTAATGGTGATAGTGCAGGAGTCACTCCAGCAGATGGTTGTGAGCTGGCCATATCAGCACTTGGAGCTTGTATTTGGTATCTAAAGAAGTGCCTTATTGAACATGAGCTTCTTTCAATGAAAAATTTTGAGGTTTACAAACCTTTGGATGAGGTATCTGTGCACAGAAAGAGTGCTTCTTTCACAAAAGGAAGAAATCACATGATGCTTGATGGTGTGACTTTGACCAATTTGGATGTTGTACCCAATGGGGTAGATGTGCTATTGGAAGGAACCTTACTGGATCAAGTAGACAACTGCTGCACAGCATTTGGCAAGCGACTTTTCAAGCAGTGGTTGTGCTCACCATTGTGTAATCCCAAATCAATCAACGACAGGTTGGACGCTGTGGCAGATTTGACATCTCGAATATCTACAGTGTCAAACGTTCGAGAAATCTTGAGAGGACTACCTGATCTCGAAAGATTGTTGAGAAAAATTCACAGTATGGGTTCTGTAAGTCGAAGCAGAGATCACCCTGATAGCAGAGCAATATTTTACAATGAAGTTACATATAGTAAGAAGAAAATTACAGATTTTTTGGCCGCTCTAGAAGGATTCCAGGATGCCAGGAAACTCTCTGCTCTTTTCGATGACCATCTGGATGGGCTGACGTCGAAACTATTGAAATCGACTGTTGAATCGTCTGCGAATGGTGGCAAGTTTCCAGATTACCGAGAAGAACTAAATTTTTTCAAGAATGCCTTCGACCATGCAAAAGCCAAGCAAGATGGTGTAATATTACCCAAACCAGGTGTCGACGTTGATTACGACAGAGCTTTACAGGACATTCATTCTGCAAAGAATCAACTCAATGATTATCTGCAACAGCAGAGGAAGCGGCTGTCGTGTAAGACAATAAGCTTTTGGGGGACTGGAAAGAACAGGTACCAACTTGAAATCCCAGAAAGTGTTCTTGCTAGACACACGCCATCAGAATACGAACTACAATCTTCTAAGAAAGGTTTCAAGAGATATTGGACGTCCGACATTGTGAAACTTCATGAAAAGCTCACCGAGGCCGAAGAAAGGCGAGATGCATCACTAAAGGATACAATGAGAAACGTCTTTCATCAGTTTGATGAAAAGTACGTCATATGGGAAAGCACCGTCAACTGTGTAGCAGTACTGGATTGTTTAATAAGTTTGATGGTTTACAGTTCGCAGACTGAAGGGATAATGTGTCGACCAGAGGTTCTACCTATTGTTGATGGGCAAGAGCCTTTCTTAGAAATACGTGATGGTAGACATCCTTGTGTTTGTCGGACATTCAGCGGTGGATATTTTATTCCAAATGATACTGTCATTGGTCACTGGGATATGAGCAACTCCTCTCCTGTATCCACACATTCTTGTGTGGTTGTCACAGGACCAAATATGGGAGGCAAATCAACCCTTATGAGACAAGTTGGTCTAATCGTGATTCTTGCCCAACTGGGATGTTACGTTCCTGCTGAAAAGTGTCGGCTGACCCCAGTTGATCGTGTATTCACGCGACTAGGCGCGCATGATCGAATCCTTTCAGGGGAAAGTACATTTTTTGTGGAATTGAGTGAGACGTCGTGCATCTTACGCCATTCCACTAAACATTCGTTGGTTTTATTGGATGAATTAGGTCGTGGCACTGCAACGTATGATGGGACAGCAATAGCCTCAGCTGTGATCCAAGATCTTGCTGGAGAGATCCAATGTCGTACTTTATTTTCTACTCACTACCATTCTTTGGTTGAAGATTTCAGTGACGACCCTAGTGTTCGGCTTGGGCACATGGCGTGTATGGTTGAAAATGATGACGAAGAGGGTGATCCCAGCAAAGAGACAATCACTTTCTTGTATAAGTTTGTCGAAGGTGCATGCCCGAAGAGTTATGGCTTTAATGCAGCACGGCTTGCAAATATCCCTGAAGAGGTAATTCGTGTCGCGATTGACAAAGCTAGACAATTTGAGGAGAATGTTGAAAGAATAAAACTTTTTAGAACTCTCACATGTCAAAAAACAAGCAATTTCAAAGACCTCATCTCCATCGCACGGAACAGAATGAAATAA

Transcript

Csp0G401720

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF01624 all species →	MutS_I	MutS domain I	Domain	Interproscan
PF05188 all species →	MutS_II	MutS domain II	Domain	Interproscan
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016151 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR036678 all species →	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR007695 all species →	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR007860 all species →	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR017261 all species →	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032301 all species →	Cellular Component	MutSalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08737	MSH6; DNA mismatch repair protein MSH6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.