Gene detail

Detailed information of Csp0G404530 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00751:2746159...2750024
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G404530

ATGTTTAAGAACACTGAAGAGAGTTTAAGTGGAGTTCCCAGTGGTGGAGAAGCTTTTGAATGGAAAGAAAACGAAGCAAAAAAGGACACAAGTCTTGTAAAAAACACAAACATTTCTCCGCCGACCACTTTCAAAGTTTACGATAAAGTATCGGAAAAGAACCGGTACATTCCTCGCAAATGGACACAAGAAGAGTTTGAAGCAGCTTTGCCTCAGAGATTTAAAGAGGGAAGCAAAAAAAGCAACCCACATCCCATTGAAGACGAACTGGCAAACTACAAGAAACAATCGCCAGAATCCAGTGAAGAAACACTACCTTTTCCCAGCACAGCAGGTCGACGTCCTCGCAAAAAACCTGAAATAAAAGAGAAGATAAGTAACTTGAAGGCTATATTTGAAGGTGTTCAAAACGAAGATGATTGTGACCAACTAAGCGATACAAGCAATGAGCTGAAAAGCTGTAAAGAGAGTGAAGCCAATGTTATACTGACCAACGAACAAGGTTCACAAGAAGAAACAACAGATGGAGTCATTGGAGGGGTGAAATGTAAAGAAGATGAACATGTATTCATTGAAAGTCGTCACAATGCATTCACTTCGTTCATAGATGGTTGTCTGCAGTGTCTTCTCAACCTTGAACCAATCTCCCAATCATTAATTGCTCCAACTGCTAAAACCTACTCTTCCTTTGCTAGTGATAAACTTCGAACTGTATTATCATCTGATAAATCAAGTCCAGAGGAATTACAACAACTATGTTTGCAAGATCTATTTCCAAAGCTTTACAAGGAAGCACAAGAGCAGAGCAAAAGCTGTGACGAGGTGCTGGAGTTTCTTCTCAATACACTTATCGATGGAAATCATCTACGTTCAGTTTTCGAAGGGAAATTTTGCCACTCCACAGTCTGCGAGCGATGTGCTACCGTGGTAAAAGAGTACCAGCCATTCGTATTTCTTAACCCAGTGTCACCACCATCTGGGGGCCATACACTGCAGGTCAATTTGTTCACGTGTAATAACAGCGTTTGGCAACTGTCACCGAAGGAGACTTCGATAACTCCAGGAATGACGGTAGCTGGTTTAAAAGAAGAGTTACTAAATTATCCTGAGTTTCTTGGTACCCGTGATGTATCAGCCATCGAGCTGGGAGAAGTCAATGAGAGCTGTTTGGATAAGGTGTTCGACGACACAGAAGACCTGTTGGGACTAGGCAGGTCTTTGGGGACTATTGTCGCATTTCACGTCGTGAACTATCATTCTGAACTGAATCACCACAGCGAAACAGATGAGGATTATCCTGCAAAAGCAGCGAAATCAAGATCTCGCGGGTTCGCCGATATGTCCTATCACCTTTACTTCAACTGCGGACTATGTCTAAACGATGGAAAGGAGGTGGGGTTGCTGATGCATCAGAGTTGTGGAGGAATGGTGTGTCGCGATTGCTTGGATGAAATCCTTCAAACCAACACAGGTTGGGAACTCTGTCCTTGTCCCATCTGCGAGCGACCCATCAATCTTGACAAAGAATTCTGCCAGACGAGTATGGACGCCAATAGAAATCAGGATATGCAACCGCAACCCGATGTTGTTTTTGGGGTTGTTTTGCGTACCGCTGTTTCACACTACCGCGGAGGGAGTAGCGTTGAGCTGTTTGGATGCCCTCTACTCGTTTCACTTCCTCAGGAAACCTCCGGATTTCAGCTTTATCGTTTCATCGGTTACCTCCTCCCGAAGGGACTACCTATGAAAAATAAAACATCCTTTACACTACACAAGGTTGACAAATCTGGTCTTCGCTGTGCAGTAGCTGGGTGTTCTTCCAACGATTGCACTGGTTGTCTCGTCCGTGTCAACGACAACCTAACCTTGCAGACTGACACGTGTTTAGCAGTCCACTTTGACGATCTGGAAGAAGCCTCGAAGAGAGACTTTGGCATGAACATTCATGAAACAGCTCGAATTTCCAAGACGCAGGCTCTCTTTGATGGAATATTACGATCGTGCGTTGAAGGATGTTCCTCCGTGGAAATGTTGTGCCCGAAATGTTTCAACATCAGCCAGACAACCTCGTCCATTTTAAAGTTCCCACAGCTGCTCATCATCCACCTCAACAAACAGTTCGCCATCAAGGGACTGCCAACGAATTCTACCATTGCAGACGTCGCCAGGTTTTTCACGATGGAGCGTGGGAACGGATCACGTGAAGACGGCAAGCCGGGCTTGATGTATCAACTCAGAGCGGCCGTCTTGCAACCAGAAAGTAGCCCAGTTTCGATGTACCAGACATGTGCTATTGGAGCCAACAACAAGTGGACACTCTACGATGGTTTGCAAGTGAACGAAAGGCATCCAACTCAATTGTATTTGACAAGCGATAGCGTCCTATTCTATGAGCCAGTCACTGATCCAGAATCCCAACTAAATGGAGAAGTGCGTCAATTCCTGCAATCAACGACAGTCGGCGAGAAATCAGAAGGGGCAGGTGAAAGCAACGATTCAAACCATCCAGCGTATGGTATTTACCACAGACAGCTACCCGATGTCAATACATTAGATCCCATCGCAGAGGGTCCGCACGAAGCCATAAAGCAACAACCAATAAAAGAATATTCCAGTACAAACAACCAGGTCCACAACAATGTTAGCTTCACGTTGAAATCCGCCAATAGCCAACTGGAGCCTGGAGAATGGTTTCCAGGGAAAGACTTAGCACATGATAACAATCGACGATTTCCACAGCCAGGTGTAAATTATGGTTCACGGCTTTCTCTGGGGGAAATGGAGAGAGGAAGAACTACCGCAAAGCCTCGCAAGGGGATTACAGTGGTTGCTTTGGATAATATCGACACCATCAGCCCGATATACACAACAGATGTTTGGAAATCCGAGTCGCGGGTGATTAAAGAAACGAAGAAGCTAGTGAAGGCCGTCAAGAGAGAAGACGCATACGAGATTGTGTGTTCTTTAAATAGAGGAGCAGACCCATGTTTAGCAATCAACGATGTTTCAGCTCTTCACTTGGCAGCGGGAATCAAGTCAGACCAGCGACGCTGCATAGTTACGTATCTCTTAAGGTACTGTAGCGACGACATCAACGTTCCAACCGCAGATGGTACCACGCCCATCCACGTGGCGGCGGCGTGGGGACACCAAGACGCACTGGAACTACTACTTCTCCATGGGGGTGATCCTTTTGAGCTGACGGACCTCGAGGGATACAGCGCATTCGACATGGCCACGAACGACTGCTCAACGTATCTCCAATCAGTGTACCACGGTCAACACTCAACGCGTCCCCTAGAACTATCATCGAGTTCTTACGCCTCTCATCGCATGAGCCACCTGAGCAAGCGATCTCTCAAAGATGAGAACGTCCATCGTAAAGAACAGAGATTAGAAGATCTGGTGCGTTCCAATGTCTGTCTGCCTTCTTTCGTAGAAGACCATACCCATAGCACCCGCATTCGTCGTCGCTGGATACACAGGTTGAGAAACTTCCGAGAAAGGTCTTCTGGAGTTTTCAGAAGTCTTAGAAAGATCAGCAGGATCAGACGACGTTCACGAATTGGCGTCATGGTCATGGAAACGGCCCTGGAAAAGAAGAGCAATGAAGACAATTTGCATTTAAAAACGAGTACAAGTTTAATTTAA

Transcript

Csp0G404530

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR034998 all species →	Family	Ankyrin repeat and LEM domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46427 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G404530.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.