Gene detail

Detailed information of Csp0G407500 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00758:1082...5385
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G407500

ATGTATAGTGACAAGGATGTAGCAAGTGTTATAGCCTTAATTCAAGCAAATACTGGAATGACTAAAATTATTGCTACTGGTGAAATTTTACCAATACTTACAAGTTCAAACACACCATTTGATGCTAATGCTTTAAGTTCATTAGGCACTGGTGGAACCTTCCCAGTTGATCTAAGGGACATAACCCTAACTTATTCCCACAGGGGCATTACAAGTGATGGAAATCTCGAAGTAATAGTAACCATTGTTAAGAATGGAGAATCTGCTGCTGCAAGTTTTACTGTAGCTGTGAGTGGCATAAATTTTGCTAAAGTAAAAAAAGAAGCAAACAAATTCAAAAACTTTAATTCACCTGATAGCCTTAATTCTGCAGCAGCCATTTTACCTAAAAATCTAAAAGATGTTAAAACACAATTTGAGGCAATAACTGGCTATAATCCCCCTAGCCTAACTGGTGGCTATAGCATCTCTAGGGTAATTGTTAAAACAGCTTTAGATCCTAAAACAAAAAAAGCAGTCAATACAATATCTATAAGTGATACTAATAGTATCACTGCAACTAAGGATATTGTTGTTACCTTTGCTGTCAAAGCAATCTCAAAAGATAAAGGCTTATCCGGAGAAACTATAGCGGGCATTACAACTGGCCTTTCTATTTTTGGAGCAAAAGAAAATAATTTAAAAAATATTGATTTAAAAATTCCCAAAAATCAATTAATTGTTTTTACTGGTATTTCAGGTTCTGGCAAATCCTCCTTAGCTTTTAATACAATTTATGAAGAAGGTAAAAGAAGATATGTTGATTCACTTTCTTCATATGCAAGGCAATTTTTAGGTAATACTCAAAAACCATTAGTTGATTCTATTGAGGGGCTTTCTCCTGCAATATCTATTGAACAAAAAACAACACATAATAATCCTCGTTCAACTGTTGGTACTGTAACAGAGATATATGATTATTTAAGACTTTTATATGCAAGACTTGGAAAACCTTATTGCCCTAAGCATAAAGAATCAATTGATGCTCAAAAAACAAAAGATATTATTATAGTAAAGAATGAAAAAGGGTCTTATCAAAATTTATTTGAAAAGCTAAGAAAAGAAGGTTTTTTAAGAGTTAATGTTAATAACAATTTATTATCTCTTGATGATAAAATTCATTTAGATAAAAATAAAAGACATAATATTGAAATAATAGTTGATCGAATTGTTTTAAGAGAATCAGAAAGATCAAGAGTTAATGAAGCTGTTGAACTTGCACTTGAATATGGAAAAGGGCTAGTTTCTATTGAAGTTATAGGAAAAAGCAAGGATACATTTTCTAAGTTTTATTCTTGTCCTCATTGCGATTTTAATATGCCAACTATTGAACCTAGATTATTTTCTTTTAATTCCCCAGCTGGTATGTGTGAAGGTTGTAAAGGTCTTGGCTTAAAATTGTCTACTGATATAAAAAAAATAATTCCAAATTTGGATTTAAGTATTAATCAAGGTGGAATAAAATATTTTAAAAATACATTATTAAAGCACTATAATATAAACAAAGATATGCCAATTAAGAAATTATCAAAAAAAGAGATGGAAATTATTTTTAATGGATCTGATTCGATTATTGAATATTCGCTTTTATCTTCTTCAGGTAATAAATATGAACGACATGATTTTATTGAAGGGATTGGAAAAAAAATAGAAAGAAAACATTTAGGTTCTACATCAGAACAAGTTAGAACTTGGTATCGAAATACATTTATGTCTGATGTTAAGTGCAATGCTTGTAAAGGGAAGAGGTTAAATGATTATGCTCTAGCAGTGAAAATCAATAATTTAGATATTTTTCAGTTTACAAGAATGTCAGTTGAAGTTGCACTTAATAACATATATAATCTTGTTTTAGATAAAGATAAAATTAATGTGGCAGAATTAATTTTAAATGAATTATCATCAAGATTAACATTTTTAAATGATGTTGGACTTGAATACTTAACATTAGATCGTAAAGCAGAAACTCTTTCAGGTGGTGAAACACAACGAATAAGACTGGCAACACAAATTGGTTCAAATCTTTCAGGAGTTCTTTATGTTCTTGATGAACCATCCATTGGTCTTCACCAAAAAGATAATCACAAGTTAATTAAAACACTTAGAAACATGGTTGATATTGGAAACACTTTAATTGTTGTTGAACATGATGAAGACACAATTAATTGTTCTGATTTCATTGTTGATATTGGCAAATTAGCAGGAAAAAAGGGTGGCAATATTGTTTTTGCTGATAAAATAACTAATATTGAAAAAGCAAAAGACTCCATAACTGCTGATTTTCTTTTAAAAAGAAAAACAATTGATGTACCCAAATCAAGAAGAAGTGGTAATGGCAAGGTTTTAGAAGTAATTGAAGCAAGTGCAAATAATCTTCAAAAAATAAATGTAAAATTTCCTTTGGGAAAATTTATTGCTGTAACAGGAGTTTCTGGTTCTGGTAAATCAACATTGGTAGAGGAGGTATTGTCAAAATCTATTCATCAAAAAATTTCTAATCCATTTATAGTTCCAGGTAAACACAAACAATTAAAAGGGATAATGAATATTGATAAATTAGTTTTAATCAATCAATCGCCAATTGGAAGAACACCACGTTCCAACACCGCAACATATACATCTGTTTTTGATGATATAAGAGATATATTTGCAAATACACATTTAGCAAAAGCCCGTGGATTTTTAAAGGGAAGATTTTCATTTAATGTTGATGGAGGACGTTGTGATAAATGTCAAGGAGATGGAGTAATCAAAATTGAAATGCATTTCCTTCCTGATGTTTATGTTAAATGTGATCACTGTGAAGGTAAAAGATATAATAATGAAACACTTGAAATAAAGTATCGCGGAAAATCAATTTTTGAAATTTTAGATATGTCAGTTGAAAAAGCACTTGTTTTTTTTGAAAACAATATAAAAATTGCTCATAAATTAAAAACAGTTTGTGATGTTGGGTTAAATTACATTAAACTTGGTCAACCAGCAACAACACTTTCTGGCGGAGAAGCACAAAGAGTTAAATTGGCAACTTTTTTGCAAAAGAAACCAACAGGGAAGACAATATATATATTAGATGAACCTACAACAGGACTTCATCCATATGACATTAAAAAGCTTATAAAAGTTCTTAATAAAATAGTGGATGGAGGAGACACGGTTATTCTTATCGAACATAATCTGGATGTTATAAAAATGGCCGATTACATAATAGATTTAGGTCCTGGTGGTGGAATTAAAGGCGGAAAAGTAATGGCAACTGGTACTCCAGAGCAAATTTTAAAAATAAAAGCATCAGCTACAGGGGAATTTTTAAAAAAAATCATAAAGTAG

Transcript

Csp0G407500

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17755 all species →	UvrA_DNA-bind	UvrA DNA-binding domain	Domain	Interproscan
PF17760 all species →	UvrA_inter	UvrA interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR041552 all species →	Domain	UvrA DNA-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR041102 all species →	Domain	UvrA, interaction domain	Interproscan
IPR004602 all species →	Family	UvrABC system subunit A	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43152 all species →	UVRABC SYSTEM PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0009380 all species →	Cellular Component	excinuclease repair complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03701	uvrA; excinuclease ABC subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.