Gene detail

Detailed information of Csp0G407550 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00758:36013...42950
NR annotation: no NCBI-NR hit recorded
Species abbreviation CSP1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Csp0G407550

ATGCTTTCATTAGCTAACGCATTTAACAACCAAGATGTTTTAAACTTTAATAAACGAATTCAAGCTAAAATTAATTATTTTAATGACATTGAATATGTTGTTGAACCAAAAATTGATGGTGTTTCTATTTCATTGATTTATAAAAATGGAAATTTTTTAAGAGCAGTTACCAGAGGGAATGGAGTTATGGGAGAAATATACATTGCAAATTCTACATTTAAAGAATTAAATAGTGCAGGTATGAATTTCGCAAACCCCCGAAATGCTGCTTCGGGTTCACTAAGACAACTTGATTCTGAAATTACTGCAAAAAGAAAATTAGAATCATTTGTATATTCAATTCCAAACCCAATAGATCACAATTTATTTTCATATGACAAAATGCTAAAGTTTATTAAAGAACAAGATTTTAAGGTTTCAAATCTTTATAAAAAAGTGAAAAGCGCTAAAAGTATTAATAAAATAATTGTGGAAATAAAAGCTAAAAGAGAAGAGTTGGATTATGAGATTGATGTTGGTAGAACAGGGAAAATTACATACAATGCTAAACTTTTGCCTATTAGATTAGCTGGCTCTATTGTTTCAGCAGCAACATTACACAATGCGAATTATATTAAGGAAATTAATGTAAATAAAGCTATGAATATTGAAGGACTTTCAAAGGCCATTATTAAAGTATTTATTGCAAATGGTATCATCACAGACCTTCCCTCCATTATGAATCTTGATAATAAATCTTTTGAAATAAGCAATTTAGAGCGGTTTAAGGACAAATCAACAAACAATATTATAAATTCAGTGAAAAAAGCTAAAAAAGTTAATTTTGATCGATTTATTTTTGCTCTTGGTATTAGATATGTTGGTTCAAAAACAGCGACAATAATTGCTAAAAGATTAAGAAATATTGAAAATTTAAAATTAGTAGTTGGTAAAGATCTTGAGTTAATTAGAGATATAGGACCAAAGGTTTCTAGTTCATTAATTGAATATTTTAATGATGAAAATAATATTTTAATGATTGATAAATTTATTAATTATGGAGTTATTATAAATGAATTGCAAGAATCTACTTCTAATATATTTAAAGAGATTAATCATTTAAAAAATATTGATATAAAAAATGCTAAACGAATGACTAGAGTTGATCAAACAGCTATTTCTTTACTAAGAGAAGATGTTTCAAAAATTACTTTTGATAAAGTTTTATTTTTAAAAAATGCTCCCGAAGTAAAAGATGGCTATGTTTTATTTGAGAAAGTTTTAGGAATTCTTGAAGGAGCAACAGTAACAATAAAAGATTTATTTGCAACAAAAGAAGGTACAACACAGGGTTCATCAAAAATTCTTGAAGGATTTAAACCATCATATGATGCCTCAGTTGTTAAAAAAATTAAAAAAAGTGGAGCAGCTATAGTTGCAAAAGTTCATTGTGATGAATTAGGACTCGGGGGGACAGGGAAGTTTTCTGCATATGGTTTAATTAGGCACCCACTTGGTGAAGATAGAATTATTGGAGCTCTTGCAACTGATACAGGAGATTCTGTAAGGCTTCCGGCATCATATAATGGTTATGTTGGTTTTAAACCTTCATATGGAGCAATTTCAAGATTTGGAATGTTTGCATATGCATCTTCTCTAGATACAGTTGGAATGTTTGGGCATGATGTTCACGATGTTATTGAATTTTCAAAGGCAGCATTAAATATGAAAATTGATAACAAATTACATTTTGATAGAAAACATTATTTTTATCCTGATCTTCCTAAAGGGTTTCAAATTACACAACAATTTAGACCAATAGAGGCGTCTGGACAAATCTCTAATGTACATATTAAAAAAATTATTCCTTTGTTGATTAAAAATCAAAGTGCATCCCAAATTATTAAAGAGAAGGGATTTATACAAATTTCCAATGAAAATGAGATTAAAAAATTGATTGATGATGTTATGAAAGAAAATAGTGCATTTATTGAAAGATTATTTACATTAAATGTAGATGCAACTAGTGTAAAAGTTAAAAAAACTTTAACCTTAAAAAAAGAAGAATTTAAAAAAGTACCAAAAAAAGTTAAGAAAATTGAAATTAAGAAAATCAAAGTTGAAGAAAAACAAGTTTATAAAAAACTCAAAAAACAAAAAAAGATTGATAAGTATGTTACTGTCTTAGATTCAACAACTGGTCAAAATGGTATATCCCAAGCCAAACATTTTAAAGATGCAACAAATTTAACTGGAATTGTTCTTACTAAAATGGATGGAACATCAAAAGGCGGAATTGTTCTTACTATTAAAGATGTGCTTAACTTGCCTGTTAAGCTCATTGGTCTTGGTGAAAAAATGGAAGATCTTCAAGAATTTGATCTTGATGCATTTATTTATGGCATGACAAAAGAATTAATGGAGGAAAAATAA

Transcript

Csp0G407550

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00448 all species →	SRP54	SRP54-type protein, GTPase domain	Domain	Interproscan
PF02686 all species →	GatC	Glu-tRNAGln amidotransferase C subunit	Family	Interproscan
PF01425 all species →	Amidase	Amidase	Family	Interproscan
PF12826 all species →	HHH_2	Helix-hairpin-helix motif	Motif	Interproscan
PF03120 all species →	DNA_ligase_OB	NAD-dependent DNA ligase OB-fold domain	Domain	Interproscan
PF01653 all species →	DNA_ligase_aden	NAD-dependent DNA ligase adenylation domain	Domain	Interproscan
PF02934 all species →	GatB_N	GatB/GatE catalytic domain	Domain	Interproscan
PF02637 all species →	GatB_Yqey	GatB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000897 all species →	Domain	Signal recognition particle, SRP54 subunit, GTPase domain	Interproscan
IPR000120 all species →	Family	Amidase	Interproscan
IPR003837 all species →	Family	Glu-tRNAGln amidotransferase C subunit	Interproscan
IPR036113 all species →	Homologous_superfamily	Glu-tRNAGln amidotransferase superfamily, subunit C	Interproscan
IPR023631 all species →	Domain	Amidase signature domain	Interproscan
IPR041663 all species →	Domain	DisA/LigA, helix-hairpin-helix motif	Interproscan
IPR004150 all species →	Domain	NAD-dependent DNA ligase, OB-fold	Interproscan
IPR013839 all species →	Domain	NAD-dependent DNA ligase, adenylation	Interproscan
IPR036928 all species →	Homologous_superfamily	Amidase signature (AS) superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013840 all species →	Domain	NAD-dependent DNA ligase, N-terminal	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR006075 all species →	Domain	Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic	Interproscan
IPR018027 all species →	Domain	Asn/Gln amidotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11895 all species →	TRANSAMIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006450 all species →	Biological Process	regulation of translational fidelity	Interproscan
GO:0003911 all species →	Molecular Function	DNA ligase (NAD+) activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0016884 all species →	Molecular Function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G407550.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.