Gene detail

Detailed information of Csp0G407580 in Chrysogorgia sp. JL179-B06

Genomic Location: Contig00758:47501...48494
NR annotation: no NCBI-NR hit recorded
Species Chrysogorgia sp. JL179-B06 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00542 all species →	Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	Domain	Interproscan
PF00466 all species →	Ribosomal_L10	Ribosomal protein L10	Family	Interproscan
PF16320 all species →	Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043141 all species →	Homologous_superfamily	Large ribosomal subunit protein uL10-like domain superfamily	Interproscan
IPR036235 all species →	Homologous_superfamily	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Interproscan
IPR013823 all species →	Domain	Large ribosomal subunit protein bL12, C-terminal	Interproscan
IPR000206 all species →	Family	Large ribosomal subunit protein bL12	Interproscan
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR001790 all species →	Family	Large ribosomal subunit protein uL10	Interproscan
IPR022973 all species →	Family	Large ribosomal subunit protein uL10, bacterial	Interproscan
IPR008932 all species →	Domain	Large ribosomal subunit protein bL12, oligomerization	Interproscan
IPR047865 all species →	Family	Large ribosomal subunit protein uL10, bacterial type	Interproscan
IPR002363 all species →	Conserved_site	Large ribosomal subunit protein uL10, conserved site, bacteria	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11560 all species →	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Csp0G407580.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.